Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0650 ATGCAAGACATTTTTGGATCACTTCGGAGATCTTTCGTATTCCGTACTTCGCCGGAGAATAACAATCACAACGACGCCGCCAGAACAACAACCCTTGCTGATAAGATCGGTTCCTCCATTCGAAGTTCTAGATTGTTCTCTTCTAGAAACTTTCTTCCATCGCCGCCGCAAATCTCTATGATCCGGTGGCGCAAGGGCCAGTTGATCGGATGTGGTGCATTTGGTCAAGTTTACATGGGAATGAATCTCGATTCTGGAGAGCTTCTCGCTGTTAAGCAGGTCTTGATTGCCGCAAATAGTGCTTCAAAGGAGAAGGCACAGGCTCACATAAAGGAGCTCGAGGAGGAAGTTAAGCTTCTTAAAGATCTTTCACATCCTAACATCGTTAGATATTTGGGCACAGTCAGAGAGGAGGACACTATCAATATTTTCCTTGAATTTGTTTCTGGTGGATCCATATCATCACTTTTGGGGAAGTTTGGAGCTTTCCCCGAGACTGTCATTAGAATCTACACAAAACAGTTACTGCTAGGACTTGAGTACTTGCACAAAAATGGGATCATGCACAGAGATATTAAGGGGGCAAATATTCTAGTAGATAATAAAGGGTGCATAAAACTTGCAGATTTTGGGGCATCCAAACAAGTTGCTGAGCTGGCTACCATTTCTGGTGCCAAGTCTATGAAGGGTACGCCATACTGGATGGCTCCTGAAGTTATTCTCCAGACAGGGCATAGCTTCTCTGCTGATATATGGAGTGTTGGCTGTACTCTGATTGAGATGGCTACTGGAAAGCCTCCCTGGAGCCAGCAGTACCAAGAGGTTGCTGCTCTCTTTCATATAGGGACAACAAAGTCTCATCCACCTATCCCTGATCATCTCTCTGTTGAAGGAAAGGATTTTCTTCTAAAATGTTTGCAGAAGGAACCAATTTTGAGGGCATCAGCATCGGAACTGCTGCAGCATCCCTTTGTTACTGGTCAGAAGATGGATTCTGCTCCTTTGTCATATGCTGCCATGAGGAAATTTGAAGCTTATTCACCACCGTGTGCCCAAACTGTTGATTCCTTCCTGTGCAGCACAGCTGTAAATCCTCAAGACTTTGGAAATAAACAGTTGCGGGGAGTGAATGTTGATGACATGTGTGAGATAGATGACAACGATGAGTTCTCACAGAATGATGTCAAATACAGATCTTTGATGTCCAAAGATATTGAGAGTTTCAACCCTATGTCTGATCCCTCTGATGATTGGGGGAGTAAATTTGATCCTAGTCCAGACTTGGAAAAGAGAGAAGATGGTTTTGACATTAATGAAAGTTACATGCCACCCGGTCACTCTGAGGCTTTTAATGAGGGAGAGAAAGATTTTTCCTTTCCCTGCGTGCCTTCTCTGTCTGAGGAAGACGATGAGCTCATGTTGACAAAAATAAAAGCCTTTTTGGATGAGAAGGTTTTCGAACTGAAAAAACTCCAAACACCTTTACACGAAGAGTTCTATAATAGTTTAAATACGTCTTGTTTTCCCAATGTGGCTGATAGCACAAGTGATGAACCTACTCCAAAATACTTGAAATTACCTCAAAGTAGGTCACCAAGTCGGATACCAATTGGCAACCCACCTATAGTGGTTGATAATGCTGGAAGTCCTGGAAGTAATGGAAGATCCTCGTCAAATGTTGGCAATGTCAATGATGGTTCGCCGGACATTCGAGCATCTCCCCATAATGAATTGGAAGGACTGCCTGTAGACTCTCAGCAGGAGCCAATCAGCCTGAGTGTAAGCTTATCACCAGAGTTAAAGAAGATGTGGGGAGAAGAGCTTGCCATGGAGATGGAGAGACAACGAGAGAGGCGCCAAGCAGGTAGGGCGGGGAAGACATCATCGCCAAAGGATCTAGCTATACATCGTCCAAGAGAGCGGACAAGATTTGCATCTCCCAGCAAATAA 1950 0.4421 MQDIFGSLRRSFVFRTSPENNNHNDAARTTTLADKIGSSIRSSRLFSSRNFLPSPPQISMIRWRKGQLIGCGAFGQVYMGMNLDSGELLAVKQVLIAANSASKEKAQAHIKELEEEVKLLKDLSHPNIVRYLGTVREEDTINIFLEFVSGGSISSLLGKFGAFPETVIRIYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVAELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTLIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPDHLSVEGKDFLLKCLQKEPILRASASELLQHPFVTGQKMDSAPLSYAAMRKFEAYSPPCAQTVDSFLCSTAVNPQDFGNKQLRGVNVDDMCEIDDNDEFSQNDVKYRSLMSKDIESFNPMSDPSDDWGSKFDPSPDLEKREDGFDINESYMPPGHSEAFNEGEKDFSFPCVPSLSEEDDELMLTKIKAFLDEKVFELKKLQTPLHEEFYNSLNTSCFPNVADSTSDEPTPKYLKLPQSRSPSRIPIGNPPIVVDNAGSPGSNGRSSSNVGNVNDGSPDIRASPHNELEGLPVDSQQEPISLSVSLSPELKKMWGEELAMEMERQRERRQAGRAGKTSSPKDLAIHRPRERTRFASPSK* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0650 649 MobiDBLite consensus disorder prediction 511 594 - -
Lan20g0650 649 SMART serkin_6 63 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0650 649 MobiDBLite consensus disorder prediction 408 431 - -
Lan20g0650 649 SUPERFAMILY Protein kinase-like (PK-like) 62 326 IPR011009 -
Lan20g0650 649 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
Lan20g0650 649 Gene3D Transferase(Phosphotransferase) domain 1 61 352 - -
Lan20g0650 649 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE ISOFORM X1 1 604 - -
Lan20g0650 649 ProSiteProfiles Protein kinase domain profile. 63 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0650 649 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 604 - -
Lan20g0650 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Lan20g0650 649 CDD STKc_MAPKKK 62 325 - -
Lan20g0650 649 MobiDBLite consensus disorder prediction 549 566 - -
Lan20g0650 649 Pfam Protein kinase domain 64 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0650 649 MobiDBLite consensus disorder prediction 607 649 - -
Lan20g0650 649 Coils Coil 96 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0650 Lan-Chr20 5159733 5165191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0650 1 649 MAP Kinase Kinase Kinase AT1G54960 53.411 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lan20g0650 Pkinase 8.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0650 K20606 - gmx:100779001 869.381