Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0649 ATGGACAATAATGAGCAAGATAGAACTTTGCCCATTGCAAATGTGGGTAGAATCATGAAGCAAATTCTTCCTCCTAGTGCAAAGATTTCAAAAGAAGGGAAACAAGTAATGCAAGAGTGTGTGACAGAGTTTCTAAGTTTTGTGACTTCAGAGGCATCTGACAAGTGTTATAAGGAAAATCGAAAGACAGTTAATGGGGATGACATCTTTTGGGCTCTAGGGTCCTTAGGGTTTGATAACTATGCTGGGGCCATTGGAATGTACTTGCATAAATACAGGCAGAATGAAAGGGAGAAAGTGAATCAGCACAAGTGTGATAGTTTCAATGAAGAATCAGCAACAAAAACAAAAGGGCAACATGAGAATCAAACTAAAACCTCTCCTGCAGATAAATCTGGATGA 402 0.3905 MDNNEQDRTLPIANVGRIMKQILPPSAKISKEGKQVMQECVTEFLSFVTSEASDKCYKENRKTVNGDDIFWALGSLGFDNYAGAIGMYLHKYRQNEREKVNQHKCDSFNEESATKTKGQHENQTKTSPADKSG* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0649 133 MobiDBLite consensus disorder prediction 99 118 - -
Lan20g0649 133 MobiDBLite consensus disorder prediction 119 133 - -
Lan20g0649 133 SUPERFAMILY Histone-fold 6 122 IPR009072 GO:0046982
Lan20g0649 133 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 125 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lan20g0649 133 MobiDBLite consensus disorder prediction 99 133 - -
Lan20g0649 133 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 9 73 IPR003958 -
Lan20g0649 133 Gene3D Histone, subunit A 1 132 IPR009072 GO:0046982
Lan20g0649 133 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4 1 125 - -
Lan20g0649 133 PRINTS CCAAT-binding transcription factor subunit A signature 37 55 - -
Lan20g0649 133 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Lan20g0649 133 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0649 Lan-Chr20 5137323 5137929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0649 5 124 CCAAT-HAP3 Transcription Factor Family AT1G09030 63.934 4.91e-54 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lan20g0649 CBFD_NFYB_HMF 1.1e-23 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0649 K08065 - gmx:100815151 183.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0316 8 5241279 5241973 Lan20g0649 20 5137323 5137929 LSH