Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0648 ATGGATCAAGCACGAACGAACTCAGGGAACGGCGAGGACAATGTTGGGATTCCAGATGATTTGCGGTGCAAGAGATCAGACGGGAAGCAGTGGAGATGCACTGCAATGTCCATGCCCGACAAGACAGTGTGCGAGAAGCACTACATCCAGGCTAAGAAAAGGGCTGCCAATTCTGCAATGAGAGCAAACCTCAAGAAAGCTAAAAGGAAGTCATTGGGCGATTCTGATATTTATTTGGAGAGCAAAAGTGATGATCTTGATGTGCCCGTATCTTCTATTGAAGCTGAGGAACACCGTTCTGGAAAGAAGTTATTGGATAAGATCTCCAAAAATCAGTTCCGTTATAACCCTGACAAGATAAAGGGTTCTACCATGCACCATGCTATGAATCCAAATGATGATGATTCAGAGGATGAGGCAGATGCCCCTCTCTATGAAGAGAATTGGGTGTCCAATGATTCACCCACCGCTTCTGGCGAGGACTCATCCAGGAAACAAATGCAGATGAGCTTGGATGCTAATGCTACGCCGGAACATTCTGATGGAAGTTCGGGTTCTTCCCAGGACACTGGTGGGCAAACTTGCCATCAGTGCCGGAGGAATGACAAAGAGAGAGTTACTTGGTGCCTCCAGTGTGATAGGAGAGGATACTGTGATAACTGTATATCTACATGGTACTCTGACATTTCATTGGATGAAATTCAGAGGTTATGTCCTGCGTGCCGTGGTATTTGTAATTGCAAATCTTGCTTACATAGTGATAATTCCATAAAGGTTCGGATAAGGGAGATACCTGTTCTAGATAAGTTACATTATCTCCATGTGCTGCTGTCATCAGTGCTTCCTGTAGTAAAGCAGATTCATCGTGAACAGTGTTTTGAAGTTGAACTTGAAAAGAAGTTGTGTGGTGCTGAAATAGATCTTCCCAGGACAAAATTGAATGCAGATGAGCAGATGTGCTGCAATTTTTGTAGGATACCCATCATCGATTATCATCGACGGTGTCCAAATTGCTCATATGACTTGTGCCTTAATTGCTGCCGAGATCTCCGAAAAGCAACTATAGATCACAATAAAGAACCCCAAACAGAGCAAGCAAAAGCTTCTGACCGAAACATATTAAGTAAATTTCCTGAGTGGAGATCCAATGACAATGGAAGTATTCCATGCCCCCCGAAGGACTATGGTGGCTGTGGTTATTTGTCATTAAATTTAAGCCGGATTTTCAAGAAGAATTGGGTTGCAAAATTGGTGAAAAATGTAGAGGAAATGGTTAGTGGCTGTAGGATTAACAATGCTGATGATCTACCAGAAACTGGGTTGAATGCTCTCAGAGTTTGCCAATATTCTCATAGAGAGGCTGGTGATGATAATTATCTCTATTGTCCAACATCTGAAGATCTCAAAACTGATGGGATTGACAATTTTAGAAAGCACTGGAAAAGCGGTAAACCAATTATCATTAAGCAAGTATTTGCTAGGTCATCCATCTCTAGCTGGGATCCCTTGGTCATCTGGCAAGGGATTCGTGAGACAACAGACGAAAAAATGAAAGATGAAAACAGAATTGTTAAGGCCATAGATTGCTTAGACAGGTCTGAGATTGATATCGAGCTTGGTCAGTTCATGAAAGGATACTCTGAGGGGGCTGTTCATGAAAATGGTTGGCCACAGATATTGAAGTTGAAAGACTGGCCTTCACCTAGTGCGTCTGAAGAATTTCTGTTGTACCAAAGACCTGAGTTTATCAGCAAACTGCCTTTACTTCAGTATATTCATTCCAAGTGGGGTCTTCTAAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGATGTAGGCCCCAAGATTTATATATCTTATGGGATAAGTGATGAGCTTGAGAGAGGTGATTCAGTGACAAATCTTCACTTCAATATGCGTGACATGGTGTACCTTTTGGTTCATACGAATGAGTCGAAGCTGAAGGACTGTCAGAGAACTAATATTGAAATTATACAAAAAGATTGTAAGGAATCTGATGTGAAAGAATCACCAGGGGATCCCCAAATATGTCCAGGGGGGAGTTCACCTAATTCATCAGTTGGTGCCAATAATAAGGAACTGGATTTGGAGTCAGACCAGAATAAGTCAATTATGGATCAAGGGTTTGAATTTCATCCCAGTGTTGAAGGGAATATGGTCAATGGTGAACTTCCATTAAAACAAAATGGAGATGTCTCTGAGAAAACAAATCCTGGACTTCTTTGGGATGTCTTTCGTCGGCAGGACATTCCAAAGGTGACTGAATATTTGAAAATGCATTGGAAAGAATTTGGGAAGACAGATGATATTGTAAATGAATTTGTTACATGGCCTCTTTATGATGGAGCTGTTTTTCTTGACAGACACCATAAAAGCAAGTTGAAGGAAGAATTTGGTGTGGAGCCATGGTCATTTGAACAGAACATAGGGGAGGCTATATTTGTCCCTGCTGGTTGCCCTTTCCAAGCCAGAAATTTTCATTCCACTGTTCAATTGGGCCTTGATTTCTTATCTCCGGAAAGCCTGGGGGAAGCCGTAAGATTGGCAGATCAAGTCCGCTGTCTACCTAACGAACATGAAGCGAAACTTCAAGTATTGGAGGTTGGGAAGATATCTCTCTACGCAGCAAGTGCAGCCATCAAAGAAGTTCAGAAACTTGTACTTGACCCAAAACTTGGCACAGAGATTGGATATGGAGATCCTAATTTGACAGCAATGGTTTCTGAGAATTATGAGAAGATGGTGAAGCGGAGGCAAATTACTTGTGCTTGA 2799 0.4198 MDQARTNSGNGEDNVGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSLGDSDIYLESKSDDLDVPVSSIEAEEHRSGKKLLDKISKNQFRYNPDKIKGSTMHHAMNPNDDDSEDEADAPLYEENWVSNDSPTASGEDSSRKQMQMSLDANATPEHSDGSSGSSQDTGGQTCHQCRRNDKERVTWCLQCDRRGYCDNCISTWYSDISLDEIQRLCPACRGICNCKSCLHSDNSIKVRIREIPVLDKLHYLHVLLSSVLPVVKQIHREQCFEVELEKKLCGAEIDLPRTKLNADEQMCCNFCRIPIIDYHRRCPNCSYDLCLNCCRDLRKATIDHNKEPQTEQAKASDRNILSKFPEWRSNDNGSIPCPPKDYGGCGYLSLNLSRIFKKNWVAKLVKNVEEMVSGCRINNADDLPETGLNALRVCQYSHREAGDDNYLYCPTSEDLKTDGIDNFRKHWKSGKPIIIKQVFARSSISSWDPLVIWQGIRETTDEKMKDENRIVKAIDCLDRSEIDIELGQFMKGYSEGAVHENGWPQILKLKDWPSPSASEEFLLYQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISDELERGDSVTNLHFNMRDMVYLLVHTNESKLKDCQRTNIEIIQKDCKESDVKESPGDPQICPGGSSPNSSVGANNKELDLESDQNKSIMDQGFEFHPSVEGNMVNGELPLKQNGDVSEKTNPGLLWDVFRRQDIPKVTEYLKMHWKEFGKTDDIVNEFVTWPLYDGAVFLDRHHKSKLKEEFGVEPWSFEQNIGEAIFVPAGCPFQARNFHSTVQLGLDFLSPESLGEAVRLADQVRCLPNEHEAKLQVLEVGKISLYAASAAIKEVQKLVLDPKLGTEIGYGDPNLTAMVSENYEKMVKRRQITCA* 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0648 932 MobiDBLite consensus disorder prediction 149 195 - -
Lan20g0648 932 MobiDBLite consensus disorder prediction 90 196 - -
Lan20g0648 932 Pfam JmjC domain, hydroxylase 795 840 IPR003347 -
Lan20g0648 932 SMART cupin_9 575 862 IPR003347 -
Lan20g0648 932 MobiDBLite consensus disorder prediction 672 700 - -
Lan20g0648 932 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 190 255 IPR018866 -
Lan20g0648 932 Gene3D Cupin 457 871 - -
Lan20g0648 932 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 10 921 IPR045109 GO:0032454|GO:0033169
Lan20g0648 932 MobiDBLite consensus disorder prediction 686 700 - -
Lan20g0648 932 SUPERFAMILY Clavaminate synthase-like 474 868 - -
Lan20g0648 932 ProSiteProfiles WRC domain profile. 17 61 IPR014977 -
Lan20g0648 932 MobiDBLite consensus disorder prediction 1 21 - -
Lan20g0648 932 Pfam WRC 18 58 IPR014977 -
Lan20g0648 932 ProSiteProfiles Zinc finger RING-type profile. 195 242 IPR001841 -
Lan20g0648 932 ProSiteProfiles JmjC domain profile. 568 862 IPR003347 -
Lan20g0648 932 PANTHER JMJC DOMAIN PROTEIN JMJ24 10 921 - -
Lan20g0648 932 MobiDBLite consensus disorder prediction 90 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0648 Lan-Chr20 5128446 5134740 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0648 18 58 GRF Transcription Factor Family AT3G13960 46.341 2.39e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lan20g0648 JmjC 2.8e-05 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0648 K15601 - gmx:100792166 1519.21