Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0634 ATGACTAGAAAGAAGGTGAAACTTGCATTCATACTCAATGATTCTGCAAGGAAGGCAACATACAAGAAAAGGAAGAAGGGTTTGTTAAAGAAGGTGGATGAACTTAGCACCCTTTGTGGCATTGAAGCTTGTGCTATAGTATATAGCCCTTATGAGCAGCAACCAGAGGTTTGGCCATCCCCATGGGGGGTCCAAAGGGTGCTTTCCAAGTTCAGGAACATGCCAGAATTGGAGCAAAGCAAGAAGATGGTGAACCAAGAGATTTTCCTTAAACAAAGGATTCTGAAGGCTAAAGAGCAAGTAAAGAAACTGAGGAAAGAAAACCGGGAGAAGGAGATGACTCAACTCATGTTTCAATGTCTTAGTGCTGGTAAGATACTACACAATAACTTGAACATGATTGATTTGAACGATCTTGCCTGGTTGATTGACCAGAACTTGAAGGACATCGGCCGAAGGATGGAAACACTGGAAAAAAATGGTCAGGTGACTCAAAGCCAGTCTCATATGGCAGCACCACCACCACCACAACAACAACCACCAGCACTGCCAAGTAGGGTGGCGAAGAACGAAGAAATGACATTGATGGATCACGGCCATGGGCTGGAGATGAATGCTGAAACCGTGCCAAGGCAGTGGTTCATGGACATGATGAATGGTAATGGTAATGGGAATGAGACAATGCCATTTGGAGAAACCAATCTTCAGAATGGCTTTTGGCCTAACCCATTACTACCTTGA 741 0.4426 MTRKKVKLAFILNDSARKATYKKRKKGLLKKVDELSTLCGIEACAIVYSPYEQQPEVWPSPWGVQRVLSKFRNMPELEQSKKMVNQEIFLKQRILKAKEQVKKLRKENREKEMTQLMFQCLSAGKILHNNLNMIDLNDLAWLIDQNLKDIGRRMETLEKNGQVTQSQSHMAAPPPPQQQPPALPSRVAKNEEMTLMDHGHGLEMNAETVPRQWFMDMMNGNGNGNETMPFGETNLQNGFWPNPLLP* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0634 246 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lan20g0634 246 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 217 - -
Lan20g0634 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan20g0634 246 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Lan20g0634 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 217 - -
Lan20g0634 246 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lan20g0634 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan20g0634 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan20g0634 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan20g0634 246 Coils Coil 87 114 - -
Lan20g0634 246 MobiDBLite consensus disorder prediction 160 184 - -
Lan20g0634 246 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Lan20g0634 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0634 Lan-Chr20 5012443 5013430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0634 1 196 Type I MADS-box Gene Family AT5G48670 57.143 1.37e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan20g0634 SRF-TF 1.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0634 - - gmx:100813231 300.827