Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0632 ATGAATAATACTGAATTACCAAGCATGAATGAAACACTTGTTCCTTTGGCAACTCTGATTGGTCGTGACATACGGAATTTAAAAATCGAGAAGCCTTTTGTGAAGTATGGGCAGGCTGGTTTGGCAAAGAAAGGAGAAGATTACTTTCTGATCAAGACAGATTGCCAGAGGATTCCTGGGGATCCATCAACACAGTTTTCTGTCTTCGCGATCTTTGATGGGCATAACGGTATGTCTGCTGCTGTTTTTGCGAAGGAAAACATACTACGTAATGTTATGAGTGCAATACCACAGGATATCAGCAGGGATGAGTGGCTTCAAGCTCTGCCTCGCGCTCTAGTTGTTGGTTTTGTGAAAACTGACATAGAATTTCAGCAAAAAGGGGAAACTTCTGGTACAACAGCCACATTTGTTCTGATTGATGGATGGACTGTTACTGTTGCATCTGTTGGGGATTCCCGTTGCATATTAGACACCCAGGAAGGCGTTGTTTCTCTCTTGACGGTTGATCACAGATTGGAAGAAAATGTAGAAGAGAGGGAGCGCGTTACTGCCAGTGGTGGTGAAGTAGGAAGACTCAATGTATATGGAGCCAATGCGGTAGGGCCACTTCGCTGCTGGCCTGGTGGATTGTGCCTTTCTAGATCAATTGGTGACATGGATGTGGGAGAGTATATTGTGCCAATACCACACGTTAAGCAAGTCAAGCTTCCAAATGCTGGTGGAAGGCTTATAATAGCCTCTGATGGTATTTGGGATGCTTTATCTTCTGATATGGCTGCCAAATCATGCCGGGGCCTACCTGCTGAGCTTGCTGCAAAGCTGGTGGTGAAGGAAGCTCTAAGGTCAAGAGGGCTGAAAGATGATACAACTTGCCTTGTTGTAGATATAATTCCTTCAGACTGTCCTGTGTTACCAACAATTACAAGAAAGAAGGATAATTTACTAGCATGCCTTCTCTTTAGAAAGAAATCTCAAGATTCTTCAAACAAAGCTTCTAAGAAGCTTTCTGCAGTTGGTGTTGTGGAGTTATTTGAAGAGGGTTCGGCAATGCTTACGGAGAGGCTGGGTAAGGAATCTCCATTTAATTTGAACTCTGGGATTTTCCGCTGTGTGGTTTGCCAAGTGGATCAACCTCCGGGTGATGGTTTAGCAGTGAATTCTGGGACTGTCTTCCCATCAGCATCTGAGTCACGGGAAGGTCCATTTCTCTGCACAAACTGTCAGAAGAAGAAAGAGGCCATGGAAGGAAAAAGGTCTAGAATTCCCATTGTGGACAGCATAATAATCTAG 1293 0.4424 MNNTELPSMNETLVPLATLIGRDIRNLKIEKPFVKYGQAGLAKKGEDYFLIKTDCQRIPGDPSTQFSVFAIFDGHNGMSAAVFAKENILRNVMSAIPQDISRDEWLQALPRALVVGFVKTDIEFQQKGETSGTTATFVLIDGWTVTVASVGDSRCILDTQEGVVSLLTVDHRLEENVEERERVTASGGEVGRLNVYGANAVGPLRCWPGGLCLSRSIGDMDVGEYIVPIPHVKQVKLPNAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDCPVLPTITRKKDNLLACLLFRKKSQDSSNKASKKLSAVGVVELFEEGSAMLTERLGKESPFNLNSGIFRCVVCQVDQPPGDGLAVNSGTVFPSASESREGPFLCTNCQKKKEAMEGKRSRIPIVDSIII* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0632 430 Gene3D - 33 301 IPR036457 -
Lan20g0632 430 PANTHER ALPHABET, ISOFORM E-RELATED 3 423 - -
Lan20g0632 430 CDD PP2Cc 43 297 IPR001932 -
Lan20g0632 430 Pfam Protein phosphatase 2C 62 280 IPR001932 -
Lan20g0632 430 SMART PP2C_4 23 295 IPR001932 -
Lan20g0632 430 SUPERFAMILY PP2C-like 38 297 IPR036457 -
Lan20g0632 430 ProSiteProfiles PPM-type phosphatase domain profile. 32 297 IPR001932 -
Lan20g0632 430 SMART PP2C_SIG_2 51 297 IPR001932 -
Lan20g0632 430 PANTHER PROTEIN PHOSPHATASE 2C 5-RELATED 3 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0632 Lan-Chr20 4987443 4990913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0632 1 419 PP2C-type Phosphatase Gene Family AT1G09160 73.571 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0632 - - gmx:100794630 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0632 20 4987443 4990913 Lan4g1301 4 21804085 21806824 LSH
Lan14g0276 14 4011030 4015782 Lan20g0632 20 4987443 4990913 PCT
Lan2g0273 2 2311327 2314787 Lan20g0632 20 4987443 4990913 PCT
Lan20g0632 20 4987443 4990913 Lan14g0276 14 4011030 4015782 PCT
Lan20g0632 20 4987443 4990913 Lan2g0273 2 2311327 2314787 PCT