Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0630 ATGGCGACGAGGAATCGCACTTTGATTTTCAGAAAGCACAGAGATGCATTGAAGAGTGTTCGAGTTCCTTCATCCTCTTCGCCGGCGGCTTCCACATCTTCCGGCGGTGGCCCCGTCATCGAATTGATCAGCACCTCACTTCTCAACCCTAATGGTTCTTATGCTCTGGTTAGCACTGAGGATCCCGGTAGTTCAAGTAAGGGTTCACATCCTATTACTGTGGGGCTACCTCCAGCGTGGGTGGATGTATCTGAAGAGATATCAGCATATGTGCAACGTGCACGCACAAAAATGGCAGAGCTGACTAATGCTCACGCAAAGGCCTTAATGCCATCATTTGGAGATGGCAAGGAAGATCAGCATGCTATTGAGTCTCTTACACACGAGATAACAGACTTGATAAAGAAATCAGAGAGGGGACTGCGACGGCTCTCTGCTGCTGGGCCTTCTGAGGATTCCAATGTCAGGAAAAACGTGCAGCGTTCTCTTGCTACTGACCTTCAGAGCCTCTCTGTAGAGCTCCGCAGGAAACAATCAACATATTTGAAGCACCTTAGGCAGCAAAAAGAGGGTCAAGATGGGATCGATCTTGAGATAAACATGAATGGGAGTAAAGCCAGATATGAAGATGATGACTTGGATAATATGATATTTAGTGAGCATCAGATGGCAAAGCTGAAAAAAAGTGAAGCATTCACTGTAGAAAGAGAAAAGGAGATCCACCAAGTTGTGGAATCTGTAAACGAGCTTGCTCAGATTATGAAGGATTTGTCAGTATTAGTCATAGACCAGGGAACCATTGTTGATAGAATAGACTACAACATTCAGAATGTTGCAACCACAGTTGATGATGGCCTTAAACAGCTGCAGAAGGCTGAGAGAACTCAGAAAAAGGGGGGCATGGTAATGTGTGCTACAGTGCTTCTTATCATGTGCTTGGTTATGCTGGTTCTCTTAATCATTAAAGAAATTATTTTGTGA 981 0.4475 MATRNRTLIFRKHRDALKSVRVPSSSSPAASTSSGGGPVIELISTSLLNPNGSYALVSTEDPGSSSKGSHPITVGLPPAWVDVSEEISAYVQRARTKMAELTNAHAKALMPSFGDGKEDQHAIESLTHEITDLIKKSERGLRRLSAAGPSEDSNVRKNVQRSLATDLQSLSVELRRKQSTYLKHLRQQKEGQDGIDLEINMNGSKARYEDDDLDNMIFSEHQMAKLKKSEAFTVEREKEIHQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDDGLKQLQKAERTQKKGGMVMCATVLLIMCLVMLVLLIIKEIIL* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0630 326 SMART tSNARE_6 225 292 IPR000727 -
Lan20g0630 326 PANTHER SYNTAXIN 1 321 IPR045242 -
Lan20g0630 326 SMART SynN_4 71 186 IPR006011 GO:0016020
Lan20g0630 326 ProSitePatterns Syntaxin / epimorphin family signature. 236 275 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lan20g0630 326 CDD SNARE_syntaxin16 235 291 - -
Lan20g0630 326 Pfam SNARE domain 266 318 IPR000727 -
Lan20g0630 326 Gene3D - 77 284 - -
Lan20g0630 326 SUPERFAMILY t-snare proteins 76 285 IPR010989 GO:0016020|GO:0016192
Lan20g0630 326 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 230 292 IPR000727 -
Lan20g0630 326 PANTHER TARGET SNARE COILED-COIL-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0630 Lan-Chr20 4973030 4976776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0630 1 315 SNARE and Associated Proteins AT3G05710 75.000 1.12e-179 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0630 K08489 - gmx:100796741 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0343 8 5442139 5446868 Lan20g0630 20 4973030 4976776 LSH