Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0616 ATGAATTTCCAGGGACTTTTAAGCGACTTACAGGATTGGGAAGTTTCTCGTAAGGGCAAAACATCACAAATGAACCAGACTCATAAGGAAAATAAGTCATCTGGAGGAGATACAATTTCTTTTGATCGGGCAGGAAGTTATTCAGGAGAATCGTATGGTCTCTCGAGAAATAACGATCTTCATATGCGCAGTTTTGCTCATGAAGATTTTTCCGATGCTGTGTCAGAGAAAGATCTGGGTAACGAGTTTTTCAAGCAGAAGAAGTTTAAGGAAGCCATCGACTGCTATTCAAGAAGCATTGCCTTGTCACCTACGGCTCTAGCATATGCAAATAGGGCAATGGCCTATATCAAGCTCAAAAGGTTCCAGAAGGCTGAGGATGACTGTACAGAGGCCTTAAACCTTGATGATCGTTACATAAAAGCATACTCACGCCGAGCAACAGCTAGAAAAGAGCTTGGGAAAATTAAAGGATCCATGGACGATGCTGAGTTTGCCTTGAGGTTGGAACCTGACAATCAAGAAATCAAGAAACAGTATGCTGATGCCAAGTCTTTGTATGAGAAGGGAATTGTTCAAATAGCATCTGGAGCTCTGAGAAGCACTGTACAGGAAAGTAAAAAGGTGGGAAAGTCAGAGCCAAACGTTAATGGAGGGACCATTTCACATGGTACTCAAAAGATAGGGCCAACTGAAGTTTATCCTCATACAAAGGGTAATGACTCTGCTAAAGCGTCACTCTTAATGGAGGAGGTAGATAGCAAGGATACAAAAGCCAGTAACTTAAATCAAGGTCAAGAAGGAGATAGTTCTAAGAGAAATCAGAAAATTAGTAAGCCGGAAATTAAAGCTTCTATTCAAGAGCTTGCTTCTCGTGCTGCTTCTCGAGCCATGGCTGAAGCTTCAAAGAATATCACACCACCAACTACAGCTTATCAGTTTGAGGCCTCTTGGAGAAGTTTTTCAGGTGATCGTGCTCTGCAGACTCGTTTGTTGAAGGCCATATCTCCTCATGAATTACCAAAAATATTCAGAAATGCCTTATCTTCTGCCCTGCTGATTGACATCATCAAGTGTGTTGCATCCTTTTTTATCGAAGACGTGGGTTTGGGTGTCAGTTATTTGGAGCATTTGGCTAAGGTACCGAGATTCGACATGATTGTAATGTGTCTTTCTTCAACAGATAAGGATGTCTTACGCAAGATCTGGGATGAAGTGTTCTGTAGTGAGGCAATCCCAATTGAGTATGCAGAGATTCTGGACAACCTCCGATCAAAATTCAGCCTTGGACAATGA 1296 0.419 MNFQGLLSDLQDWEVSRKGKTSQMNQTHKENKSSGGDTISFDRAGSYSGESYGLSRNNDLHMRSFAHEDFSDAVSEKDLGNEFFKQKKFKEAIDCYSRSIALSPTALAYANRAMAYIKLKRFQKAEDDCTEALNLDDRYIKAYSRRATARKELGKIKGSMDDAEFALRLEPDNQEIKKQYADAKSLYEKGIVQIASGALRSTVQESKKVGKSEPNVNGGTISHGTQKIGPTEVYPHTKGNDSAKASLLMEEVDSKDTKASNLNQGQEGDSSKRNQKISKPEIKASIQELASRAASRAMAEASKNITPPTTAYQFEASWRSFSGDRALQTRLLKAISPHELPKIFRNALSSALLIDIIKCVASFFIEDVGLGVSYLEHLAKVPRFDMIVMCLSSTDKDVLRKIWDEVFCSEAIPIEYAEILDNLRSKFSLGQ* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0616 431 MobiDBLite consensus disorder prediction 17 40 - -
Lan20g0616 431 Pfam Potential Monad-binding region of RPAP3 307 396 IPR025986 -
Lan20g0616 431 SMART tpr_5 107 139 IPR019734 GO:0005515
Lan20g0616 431 SMART tpr_5 140 173 IPR019734 GO:0005515
Lan20g0616 431 SMART tpr_5 73 106 IPR019734 GO:0005515
Lan20g0616 431 ProSiteProfiles TPR repeat profile. 73 106 IPR019734 GO:0005515
Lan20g0616 431 MobiDBLite consensus disorder prediction 253 279 - -
Lan20g0616 431 SUPERFAMILY TPR-like 71 185 IPR011990 GO:0005515
Lan20g0616 431 MobiDBLite consensus disorder prediction 202 227 - -
Lan20g0616 431 Gene3D Tetratricopeptide repeat domain 60 171 IPR011990 GO:0005515
Lan20g0616 431 MobiDBLite consensus disorder prediction 202 240 - -
Lan20g0616 431 Pfam Tetratricopeptide repeat 106 136 IPR001440 GO:0005515
Lan20g0616 431 Pfam Tetratricopeptide repeat 77 105 IPR001440 GO:0005515
Lan20g0616 431 PANTHER OS05G0129900 PROTEIN 1 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0616 Lan-Chr20 4871828 4877421 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0616 77 143 U-box Gene Family AT3G07370 44.118 1.41e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0616 K23002 - gmx:100784528 587.415