Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0612 ATGGCTTCTTCTTCTTCTTCTTCTAAAGAACCAAACATAGATCATTCCACTAATTCAGACACCACTTTACACCCTTCCAACCACACAAAAATCACACAAAATTCCCCTAACCTTATCCCATGGAAATCTCAATTTGAGCAACAGATCTATGCCTCAAACCTCGCCCAAGCCCTACGCCGCACTCCTCCTTCCCGCGCCGCCCGTCAAGTCCGCGACACCGCCGATCGACTCCTCGCACGTGCCGCCAAGGGCACAACACAGTGGAGCCGCGCAATTCTCGCTTCTCCGCGTTGGAACCTTCATATGAATAAACTCAAGAAGGTGAAGAAGGTTTCGAATGGAATGATGAAAACGCGGGTTACCGGAGGAAACGGGAAGATGAAGAGGAGGTTACCGGCTGTGAAAGAGAAAGCGCGAGTTCTCAGCCGGTTGGTTCCAGGTTGCAAGAAAGTGACGTTCCAGAACCTTCTAGAAGAAACTTCTGATTATATTTCGGCGTTGGAGATGCAAGTAAGAGCCATGACGGATCTTACCCAGTTACTGGCTGGTCGAATGGTGAGTTGA 564 0.4947 MASSSSSSKEPNIDHSTNSDTTLHPSNHTKITQNSPNLIPWKSQFEQQIYASNLAQALRRTPPSRAARQVRDTADRLLARAAKGTTQWSRAILASPRWNLHMNKLKKVKKVSNGMMKTRVTGGNGKMKRRLPAVKEKARVLSRLVPGCKKVTFQNLLEETSDYISALEMQVRAMTDLTQLLAGRMVS* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0612 187 PANTHER TRANSCRIPTION FACTOR BHLH150 26 183 - -
Lan20g0612 187 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 26 183 IPR044660 GO:0006355
Lan20g0612 187 MobiDBLite consensus disorder prediction 1 36 - -
Lan20g0612 187 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 183 IPR036638 GO:0046983
Lan20g0612 187 CDD bHLH_AtIBH1_like 126 178 IPR044549 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0612 Lan-Chr20 4835993 4836898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0612 5 174 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 40.104 4.17e-36 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0612 - - aprc:113873135 180.644
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0353 8 5646909 5657952 Lan20g0612 20 4835993 4836898 LSH
Lan20g0612 20 4835993 4836898 Lan4g1313 4 21942300 21943194 LSH
Lan16g1024 16 17448030 17449206 Lan20g0612 20 4835993 4836898 PCT
Lan20g0612 20 4835993 4836898 Lan16g1024 16 17448030 17449206 PCT