Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0602 ATGGCACCGAAAAAATATTACTGCGATTATTGCGATAAGCAATTCCAAGACACTCCCTCTGATCGTAAACGACATGCTCGTGGTATTATGCACCAACAAGCCAAAGCACGTTGGTACGATTCCTTCAATATTCAACAGCCTCTTTCAAATGCTCCCATCTGCATTCATTTCCTCAACACGGGATTTTGTAGCTATGGAGATTCTTGTAGATACACTCACCCCAATCCCAACAATACAATTACCTCACAAGTCCAACAACAAGGAGGGACAGGGAGTGTGGTGCGAGATAGAATGGGAGTGTCATGGGGCAATCTACCTCCATCGCTGTACCCTCCACCTGAGGCTGGATATCCATCACTCCCCTTTATTGACTGGGGTTAG 381 0.4593 MAPKKYYCDYCDKQFQDTPSDRKRHARGIMHQQAKARWYDSFNIQQPLSNAPICIHFLNTGFCSYGDSCRYTHPNPNNTITSQVQQQGGTGSVVRDRMGVSWGNLPPSLYPPPEAGYPSLPFIDWG* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0602 126 Gene3D - 48 96 - -
Lan20g0602 126 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Lan20g0602 126 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 74 IPR000571 GO:0046872
Lan20g0602 126 SUPERFAMILY beta-beta-alpha zinc fingers 4 46 IPR036236 -
Lan20g0602 126 PANTHER NUCLEASE-RELATED 1 126 - -
Lan20g0602 126 Pfam U1 zinc finger 4 39 IPR013085 GO:0008270
Lan20g0602 126 Gene3D Classic Zinc Finger 4 47 - -
Lan20g0602 126 SUPERFAMILY CCCH zinc finger 50 76 IPR036855 GO:0046872
Lan20g0602 126 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan20g0602 zf-U1 1.1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0602 K13152 - gmx:100527203 173.711