Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0592 ATGACTAGGAAGAAGGTGAAGCTTGTGTATATCAGTGATGATAATGCAAGGAAAGCAACATTCAAGAAAAGGAAGAAGGGTATCATGAAGAAGGTGAGTGAACTCACCGTTCTGTGTGGGATTGATGCTTGTGCTATAATTTCAAACCCTTGTGATTCTCAGTTTGAAGTTTGGCCAGATCCAAAAGGAGTGAAGCAGATTATTAAGAGGTACCACAAGAGTTCAGTGATAGATGAAACAAAGAACATGAATCAAGAGAGTTTCGTTATGCAAACAATTTCTAAAGCCATGATCAAGCTCGATAAGCAGCGGAAGGAAAATTACGAGAAAGAAATGAGCGTAGCCATGTTTGATTATATGGAATCCAGAAAGGTGCCAGAAAATATGACCATCACAGATTTAAGAAATATGGACAAGTTGATTCAGGAGTATATTAGTGAGATCAGAAACAAGATTGATCAAATTGCTTGA 471 0.3758 MTRKKVKLVYISDDNARKATFKKRKKGIMKKVSELTVLCGIDACAIISNPCDSQFEVWPDPKGVKQIIKRYHKSSVIDETKNMNQESFVMQTISKAMIKLDKQRKENYEKEMSVAMFDYMESRKVPENMTITDLRNMDKLIQEYISEIRNKIDQIA* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0592 156 PANTHER MADS BOX PROTEIN 2 154 - -
Lan20g0592 156 SUPERFAMILY SRF-like 1 83 IPR036879 GO:0003677|GO:0046983
Lan20g0592 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Lan20g0592 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan20g0592 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan20g0592 156 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan20g0592 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan20g0592 156 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Lan20g0592 156 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Lan20g0592 156 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lan20g0592 156 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0592 Lan-Chr20 4614059 4614566 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0592 1 148 Type I MADS-box Gene Family AT3G05860 40.940 1.90e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan20g0592 SRF-TF 1.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0592 - - gmx:100792290 191.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0368 8 5811041 5811549 Lan20g0592 20 4614059 4614566 LSH