Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0591 ATGACTAGAAAGAAGGTGACACTAGCATACATCACTGATCAGAGTGCAAGGAAAGCAACATTCAAGAAAAGGCAGAAGGGCATCATGAAGAAGGTGAGTGAGCTCACCACTCTATGTGGGATTCAGGCTTGTGCTATGATTTGGAATCCTTTTGATGCTCAGACAGAGGTTTGGCCAGATCCAGAGGGTGCTAAGCAGCTGATTAAGCGTTATCAGGAGACATCTCTGAAAGATGAAACAAAGAACCTGAACCAAGAGAGCTTCACCAGGCAAAGGATCACCAAGGCAAAGGACCAACTGAATAAGTTGCGTAAAGAAAATCGTGAGAAAGGGACAGCCCAAGCTATAATGCATTATATACAAACCAGAAAGCTGCCACAAAACCCGACCATCACGGATCTGAAAGATATGGACACACTGGTTGAGAAGTATCTGACAGACATCAACAGTAAGATGGCTGCACTTGGTAGCTGA 474 0.4451 MTRKKVTLAYITDQSARKATFKKRQKGIMKKVSELTTLCGIQACAMIWNPFDAQTEVWPDPEGAKQLIKRYQETSLKDETKNLNQESFTRQRITKAKDQLNKLRKENREKGTAQAIMHYIQTRKLPQNPTITDLKDMDTLVEKYLTDINSKMAALGS* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0591 157 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan20g0591 157 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Lan20g0591 157 PANTHER MADS BOX PROTEIN 2 154 - -
Lan20g0591 157 Coils Coil 86 113 - -
Lan20g0591 157 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lan20g0591 157 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 154 - -
Lan20g0591 157 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan20g0591 157 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan20g0591 157 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Lan20g0591 157 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lan20g0591 157 Gene3D - 13 154 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0591 Lan-Chr20 4600690 4602190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0591 1 155 Type I MADS-box Gene Family AT5G48670 43.590 1.57e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan20g0591 SRF-TF 6.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0591 - - gmx:100792290 182.956