Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0590 ATGCCTCTATATGAGTTATATCAGTTGTCTAGAGAGAAGGTTGATAAAGAGGTTAACAACACTAGTTCAGTTGAACAATCTCAATCTTCCTTGCCTGAGAATGATTTCTTTGAGTTGGTTTTGGAAAATGGTCAGATTTCAAGCCAGGGTAAGTATAGAAAGAGCCCAACTTCTTGCAGGAGTTTGCCATCTCAATGCTTACCATCCCATAGTCCGAAGGGTGGAGATAAAGATGAAAGAGGATATGCTATGAATACAAGGTTGGGAAAGTTTCGGGACTTTGATTCCGGATTGAATGAAATCGCGATGTCGGTGCCATCAAATGAAGTGAATTTGAGTCAAGATGGGGACATGATGCCTTGGTTGGATTACACAATGGATGGCTCTTTGCAACATTACTATAGTTCTGATTTCTTAAATGAACTATCTGGTGTTACAGAAAATGACCTCCCTCAACCAAATAATTGTGCCCTTATGGACAGAAGAAGAAATGGTACGAATCAAGAATTTAAGGACTCTCATAAAAATTCTGCAAGAAATGTTTCTGGTTTAGAACAAGGGGATGTTTCTAAGGGTTCTTCAGCTAGAGAAGTTGATACTTGTGGGCCTAAAGTTAGCACCAGTCAGTTATACCCTCCATCATCACATCAATGTCAAACACCATTTGCATCTGTTAGATCCAAAGTATCAGATATAACTGAGAATAATACAAGTAGTGCTACTGAGCATGCACCTCGTGGCGAAACAACTCAGATTGCATCTTCCTCTAGTGATTTTTATAGCTTAATGATGCAGAAGCAGGATCCTATTATACCATTGCCTACCAATGGTTCAACGGTAATGAATTTCTCCCATTTTGCAAGGCCTGCTGCTATTATGAGAACTAATCTTCATAACGTTGGCTTGAAGTCTGATTTGTCTTCAGGAAGACCAGACAGTAGGGGAAATAAGAATAAAGGTACAGCTAGAACTAGCAGCAAACCTCCCGAATCAATAAAAGTTGATTCAAGTGGTCATTGTTCAAAGGAACCAATCATGCACTGCCAGCAGGTTATGGAGCAATCTAAAGTTGATTTGAAACGGTTGGAGCCAAAATCTCTTGAACAGAATGCTGTAGCTTCTAAACAGTTGGACCCTGCTTGCAAGGAGAATTCTATTAAGATTGATAAAACTTCCAATCAAATTATTGCTAAAAGTGGCTCTAAAGAACAAATAGCCATTGAAAAAAGCATGGAGCCGGCAGTAGCCTCCTCTTCCATTTGCTCTGGCAATGATACAGGCATAGTTTCAGACGAGCCAAAGCAAAATTTGAAGCGGAAAAGTAGAGATACTGAGGGCTCTGAGAGTCATAGTGAAGATGTTGAGGAAGAATCTGTGGGTCTTAAAAAGGCGGCTACTGGACGAGGACGTACTGGTATTAAGAGAAGCCGTGCAGCTGAAGTGCATAATCTATCCGAAAGGAGGCGAAGAGACAGGATCAATGACAAGATGCATGCATTACAAGAACTCATACCTAATTGCAACAAGGTGGATAAAGCTTCAATGCTAGATGAGGCAATTGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATGATGTCAACGGGAGCTGGTTTATACATGCATCCGATGATGATACCTCCAGGAATGCAGCACATGCATGTGCCAAATACAGCTTCCTTTTCACCTATAGGTGTTGGCATGCAAATGAGGATGGGCTATGGGATGGGTATGCCTGACATGAATGGTGGATCTTCTAGATTCCCAATGATTCACATGCCCCAAATGCAAGGACTTCCCATGCCAATGCCACATACTCCCGTATTTCCTTTTTTAGGAGGGCCTTTTGTGAACTCACCAACTCTGGGACAACATGCCGGGGAAACAGTAGGAGTTGTTGAAAGTGGGAATTCAGCTTCATCAGACTTAAAAGATCCAATGCAAGTTAAGCAAAGTACTGGTGGCTGTGACTCAACAAGTCAGATTGCTAACAAGTGTGAAGCAGCAACTGTTGGATTTGAACAGACAGCTTTGGTGCAAAATAGTGGTCATACCTCTGATGTTAATGACAGTGGAGCTGTTAATCCTGGCAAAGAAGATAGCCTTGTGATTGGTTATGATTGA 2124 0.4134 MPLYELYQLSREKVDKEVNNTSSVEQSQSSLPENDFFELVLENGQISSQGKYRKSPTSCRSLPSQCLPSHSPKGGDKDERGYAMNTRLGKFRDFDSGLNEIAMSVPSNEVNLSQDGDMMPWLDYTMDGSLQHYYSSDFLNELSGVTENDLPQPNNCALMDRRRNGTNQEFKDSHKNSARNVSGLEQGDVSKGSSAREVDTCGPKVSTSQLYPPSSHQCQTPFASVRSKVSDITENNTSSATEHAPRGETTQIASSSSDFYSLMMQKQDPIIPLPTNGSTVMNFSHFARPAAIMRTNLHNVGLKSDLSSGRPDSRGNKNKGTARTSSKPPESIKVDSSGHCSKEPIMHCQQVMEQSKVDLKRLEPKSLEQNAVASKQLDPACKENSIKIDKTSNQIIAKSGSKEQIAIEKSMEPAVASSSICSGNDTGIVSDEPKQNLKRKSRDTEGSESHSEDVEEESVGLKKAATGRGRTGIKRSRAAEVHNLSERRRRDRINDKMHALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSTGAGLYMHPMMIPPGMQHMHVPNTASFSPIGVGMQMRMGYGMGMPDMNGGSSRFPMIHMPQMQGLPMPMPHTPVFPFLGGPFVNSPTLGQHAGETVGVVESGNSASSDLKDPMQVKQSTGGCDSTSQIANKCEAATVGFEQTALVQNSGHTSDVNDSGAVNPGKEDSLVIGYD* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0590 707 MobiDBLite consensus disorder prediction 682 707 - -
Lan20g0590 707 Pfam Helix-loop-helix DNA-binding domain 481 527 IPR011598 GO:0046983
Lan20g0590 707 MobiDBLite consensus disorder prediction 417 484 - -
Lan20g0590 707 SMART finulus 483 532 IPR011598 GO:0046983
Lan20g0590 707 MobiDBLite consensus disorder prediction 302 340 - -
Lan20g0590 707 PANTHER TRANSCRIPTION FACTOR PIF3 1 653 IPR044273 GO:0003700|GO:0006355
Lan20g0590 707 Gene3D - 473 535 IPR036638 GO:0046983
Lan20g0590 707 MobiDBLite consensus disorder prediction 309 332 - -
Lan20g0590 707 MobiDBLite consensus disorder prediction 48 80 - -
Lan20g0590 707 MobiDBLite consensus disorder prediction 432 463 - -
Lan20g0590 707 CDD bHLH_AtPIF_like 477 539 - -
Lan20g0590 707 MobiDBLite consensus disorder prediction 417 431 - -
Lan20g0590 707 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 477 526 IPR011598 GO:0046983
Lan20g0590 707 MobiDBLite consensus disorder prediction 167 253 - -
Lan20g0590 707 MobiDBLite consensus disorder prediction 200 253 - -
Lan20g0590 707 MobiDBLite consensus disorder prediction 48 68 - -
Lan20g0590 707 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 475 538 IPR036638 GO:0046983
Lan20g0590 707 MobiDBLite consensus disorder prediction 636 658 - -
Lan20g0590 707 PANTHER TRANSCRIPTION FACTOR PIF3 1 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0590 Lan-Chr20 4585662 4590392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0590 1 623 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 33.281 1.01e-62 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan20g0590 HLH 7.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0590 K12126 - gmx:100794974 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0590 20 4585662 4590392 Lan4g1332 4 22156148 22161192 LSH