Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0588 ATGGGAAGACATTCTTGTTGCTATAAGCAGAAGCTGAGAAAAGGTCTGTGGTCTCCAGATGAAGATGAGAAGCTTTTGAATTATATAACTAAACATGGTCTTGGATGTTGGAGCTCAGTTCCCAAACTAGCTGGTTTGCAGAGGTGTGGAAAGAGCTGCAGGTTGAGGTGGATAAATTACCTGAGACCTGATTTGAAGAGAGGAGCATTCTCACAGCAGGAAGAGAATTTGATAATTGAACTGCATGCAGTCCTTGGCAACAGGTGGTCTCAGATTGCAGCACAGTTACCAGGAAGAACTGATAATGAGATAAAGAACCTATGGAACTCATGCCTCAAGAAGAAGCTCAGGCAAAGAGGCATTGATCCAAACACTCACAAACCACTCTCAGAGGTTGAGAATGACAAGGACAAGCCATCCATAGCAGACAAAAAATTAGCTTCAATGGGATCCAATGAAGTGTGTAGTTTTGTTGAGCCAAAAAAAACCAACCAAGGTTCCATTCCTCCAGAGAGATATAACTCACTTGAAGTCTCTACATGTTCTAAGATCAACAACAAAAGTAGCAACAGTAACTTGACCAACTCCATCAATAGTTGCAGACCATCTGATATGGTAGGAAATTATTTCTCATTCCAACACTTGAATTATGGACCAAACATGAACAACACCCCTCTTTACATGTCAGACCTTAATTCTGGTATAACTTCTACTATACTCCATAATTCTGTGTCAACCTCATCAATTTTCCATACTCCAACACATGTAAAGCCTACTGTTACTCTCCACTCTAATAACAACTTCGACAACAATCCTTCTATATCTTCTGGTGACATTGGTGGGAACAGAAGCACTATGCAGTTACAAAACAACACAAACTTCCTTCGCAATAATAGCACTATGACATGGGGGATGGAAGAGTCTGTGAAGGCTGATAAAGATGCTATATCTTTACAAGGAGAAGAACAAGAAGAGATAAAGTGGTCTGAATATCTTAACACTCCATTCCTTCTTGGAAACACAGTGCAGAATCAAACCTCTCAATCTATCTATAGTGATGTGATTAAACCAGAAAGTGGGTTCATAACAGAAGATTCAAGTACTGGTTGGCAACAACATAACCAGCAGCACCAACCAGCTTTTCAACTTTCAGATATATATAATAAAGATCTGCAGAGATTCTCAGTGGCTTTTGGACAAACCCTCTAG 1209 0.3995 MGRHSCCYKQKLRKGLWSPDEDEKLLNYITKHGLGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENDKDKPSIADKKLASMGSNEVCSFVEPKKTNQGSIPPERYNSLEVSTCSKINNKSSNSNLTNSINSCRPSDMVGNYFSFQHLNYGPNMNNTPLYMSDLNSGITSTILHNSVSTSSIFHTPTHVKPTVTLHSNNNFDNNPSISSGDIGGNRSTMQLQNNTNFLRNNSTMTWGMEESVKADKDAISLQGEEQEEIKWSEYLNTPFLLGNTVQNQTSQSIYSDVIKPESGFITEDSSTGWQQHNQQHQPAFQLSDIYNKDLQRFSVAFGQTL* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0588 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan20g0588 402 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan20g0588 402 Gene3D - 11 67 - -
Lan20g0588 402 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan20g0588 402 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lan20g0588 402 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan20g0588 402 CDD SANT 17 61 IPR001005 -
Lan20g0588 402 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lan20g0588 402 SMART sant 13 63 IPR001005 -
Lan20g0588 402 SMART sant 66 114 IPR001005 -
Lan20g0588 402 MobiDBLite consensus disorder prediction 121 141 - -
Lan20g0588 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan20g0588 402 PANTHER MYB DOMAIN PROTEIN 55 1 395 - -
Lan20g0588 402 PANTHER HOMEODOMAIN-RELATED 1 395 - -
Lan20g0588 402 CDD SANT 69 109 IPR001005 -
Lan20g0588 402 Gene3D - 68 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0588 Lan-Chr20 4565430 4567296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0588 1 402 MYB Transcription Factor Family AT1G09540 50.732 7.07e-117 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan20g0588 Myb_DNA-binding 8.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0588 K09422 - gmx:100788976 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0372 8 5864237 5866363 Lan20g0588 20 4565430 4567296 LSH
Lan20g0588 20 4565430 4567296 Lan4g1334 4 22179756 22182232 LSH
Lan4g0929 4 11674731 11676524 Lan20g0588 20 4565430 4567296 PCT
Lan20g0588 20 4565430 4567296 Lan4g0929 4 11674731 11676524 PCT