Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0585 ATGGGTATTAAGGGTTTAACGAAGCTTTTGGCTCACAATGCCCCAAAATCAATGAAGGAGAACAAATTCGAAACCTACTTTGGACGCAAAATCGCCATTGACGCTAGCATGAGCATTTACCAATTCCTTATTATAGTGGGAAGAAGTGGAACTAAGATGCTCACTAATGAAGCTGGTGAAGTTACCAGTCATTTGCATGGGATGTTGTTGCGGACAATCAGACTTCTAGAAGCTGGGATCAAACCAGTATATGTTTTTGATGGTAAGCCACCTGATTTGAAGAAACAAGAGCTGGAAAAACGTTACTCAAAGAGGGCTGAGGCTACCGAGGGTTTGGCAGAAGCCATAAAGGCTGACAATAAGGAAGACATTGAGAAATTCAGTAAACGGACGGTGAAGGTTACAAAGCAGCATAATGATGACTGCAAAAGACTTCTAAGACTCATGGGATTGCCAGTTGTTGAGGCACCCTCAGAAGCAGAGGCACAATGTGCTGCACTTTGCAAAGCTGGAAAGGTTTATGCCGTGGCTTCTGAAGACATGGATTCCTTAACGTTCGGAGCACCAAAATTTCTTCGTCACTTGATGGATCCTAGTTCGAAAAAAGTTCCAGTGATGGAATTTGAAATTGAAAAGATTTTGGAGGGGCTAAATATGACCATGGACCAATTTATTGACTTCTGCATTCTTTCTGGATGTGACTATTGTGAAAGCATTCGAGGGATTGGGGGAATTACTGCTTTGAAGCTCATACGTCAACATGGCTCTATCGAGAATATACTGGACAACATAAATAAAGAGAGGTATCAGATACCAGATGATTGGCTGTATCAGGAGGCTCGACACCTTTTTAAAGAACCAACAGTCTCAAGTGAAGAAGAGGAACTTAATCTTAAGTGGTCTGGTCCAGATGAAGAGGGGTTAATAACATTTCTGGTAAATGAGAACGGGTTCAACAATGATAGGGTGACAAAGGCAATAGAAAAAATTAAAGCAGCAAAGAACAAGTCATCAGAAGGCCGATCGGAACCATCTTTTAAGCCAACTGTAAATCCATATGTACCTATGAGACGGAAGAGGATTCAAATTAAATTGATCAATAATATTGATCAGTCTTCTTCAAAATCTGAAGGTGAACACTGGAAAGAAGGAAGGAAATACCAGAAAATAATGCTAAAGAGACTAACAAAAACAAAAAGTACAAGGGCAGTGCTGGTAGGAAAAAGAAATAGTTGGCTTTGTATCTTAAAAAATATTGGAGCCATTTGCATGTTAATCAGCCATCTCATCAGATTCAGACCCTCTTCAAGACCTCTGTGTGGCTGA 1326 0.4042 MGIKGLTKLLAHNAPKSMKENKFETYFGRKIAIDASMSIYQFLIIVGRSGTKMLTNEAGEVTSHLHGMLLRTIRLLEAGIKPVYVFDGKPPDLKKQELEKRYSKRAEATEGLAEAIKADNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGLPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEIEKILEGLNMTMDQFIDFCILSGCDYCESIRGIGGITALKLIRQHGSIENILDNINKERYQIPDDWLYQEARHLFKEPTVSSEEEELNLKWSGPDEEGLITFLVNENGFNNDRVTKAIEKIKAAKNKSSEGRSEPSFKPTVNPYVPMRRKRIQIKLINNIDQSSSKSEGEHWKEGRKYQKIMLKRLTKTKSTRAVLVGKRNSWLCILKNIGAICMLISHLIRFRPSSRPLCG* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0585 441 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788
Lan20g0585 441 Gene3D - 2 218 - -
Lan20g0585 441 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Lan20g0585 441 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Lan20g0585 441 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Lan20g0585 441 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Lan20g0585 441 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Lan20g0585 441 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Lan20g0585 441 PANTHER FLAP ENDONUCLEASE 1 1 373 - -
Lan20g0585 441 Pfam XPG N-terminal domain 1 108 IPR006085 GO:0004518
Lan20g0585 441 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Lan20g0585 441 CDD PIN_FEN1 4 332 - -
Lan20g0585 441 Pfam XPG I-region 150 234 IPR006086 GO:0004518
Lan20g0585 441 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 373 IPR006084 -
Lan20g0585 441 SMART xpgn3 1 108 IPR006085 GO:0004518
Lan20g0585 441 SMART xpgineu 147 219 IPR006086 GO:0004518
Lan20g0585 441 Gene3D - 219 286 - -
Lan20g0585 441 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 348 IPR036279 -
Lan20g0585 441 CDD H3TH_FEN1-Euk 222 289 - -
Lan20g0585 441 SMART HhH_4 221 254 IPR008918 GO:0003677|GO:0003824
Lan20g0585 441 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0585 Lan-Chr20 4481833 4533016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0585 1 359 Core DNA Replication Machinery Family AT5G26680 80.780 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0585 K04799 - gmx:100792878 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0585 20 4481833 4533016 Lan4g1335 4 22202155 22207939 LSH