Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0581 ATGGCTTCTATCATTGGCGTTTCTTCCATTTACCAAACCCCTTCTCTCGAACTCCTTAAACGACAACAAACTAACCCCTCCGTTTCATTAAAACCATTGTCGTTTGACAACAAGTCTCACTTCAACACTGTTCTCAGAGCTCACCTCAATAACCGAACCCTTTCTGCCATTGCTACCAACAATTCTTCTGTTCTCAGTGAAGAAGCGTTTAATGGCCTTGGTTTTGATGATGTCACTCGTGACGATGATGAGTTGCGTGGTTTTGAGTATGAAAATGGAAACCCTTCTTCTGTTCCTGTCAGTAAAGATGAACTTGATGTTTCTAAGTTGGATTTGCCTTCTAGACTTATACAATCGCTCAATAAACGTGGAATTACTCACCTTTTCCCCATTCAGAGAGCTGTGCTATTGCCCGCACTAGAAGGTAAAGATATCATTGCTCGGGCAAAGACTGGAACTGGAAAGACATTAGCGTTTGGAATTCCGATTCTTAAAGGCCTCAGTGATGATGACCGTAATTCTCTGAGGCGTGGTCGCCTTCCGAAAGCATTGGTCCTTGCACCTACTAGGGAGTTGGCAAAACAAGTCGAGAAAGAGATAAATGAATCTGCACCATATCTGAGCACAGTTTGTGTCTATGGTGGTGTTTCCTATGTAACACAGCAAAGTTCACTATCACGTGGAGTTGATGTAGTGGTTGGTACACCTGGTAGAATAATTGACCTAATAAATGGGAACAGCCTCAAACTGAATGAAATTGAGTATTTAGTCCTCGATGAAGCTGACCGTATGCTTGCTGTTGGATTTGAGGAGGATGTAGAAACAATTTTACAGACGGTCCCAGTCGAGCGGCAGACCATGCTTTTTTCTGCAACCATGCCGGGTTGGGTGCAGAAACTGTCAAGAAAATATTTGAAGAAACCATTGACAATAGATTTGGTTGGTAATGAAGAAGAAAAGCTAGCTGAAGGGATCAAGCTTTATGCTATGTCAGCCACCTCTACTTCGAAGAGGACAGTTCTTTCTGATCTTGTAACTGTTTATGCAAAGGGTGGGAAGACTATTGTTTTCACACAGACAAAAAAAGATGCTGATGAAGTGTCATTGTCCTTAACAAATATTATATCTTCTGAAGCATTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTCCGGCAAGGGAAATTCACGGTGCTGGTTGCCACTGATGTTGCATCTCGTGGACTTGATATTCCCAATGTTGATTTGGTTATCCATTATGAACTTCCCAATGATCCTGAGACTTTTGTACACCGCTCTGGTCGAACTGGGCGTGCAGGAAAACTAGGTACTGCCATTCTGATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCACTTGAGCGTGATGTCGGCTGCAAATTTGAATTTATTAGTCCACCAGCAATAGGAGAGATTTTGGAATCATCCGCCCAGCAAGTTGTTGCTACACTTAAACTTGTTCATCCTGAGTCTATTGAGTTCTTCATGCCAACCGCACAAAAATTGGTTGAAGAACAAGGAGCAAATGCCCTTGCAGCTGCACTAGCACAGCTGAGTGGATTCTCTCGACCTCCGTCATCCCGGTCTCTTATCAACCATGAACAGGGATGGGTTACGTTACAACTGACTCGAGATGGAGATAACTCTAGAAGATTTCTTTCTGCAAGATCAGTAACTGGGTTTTTGTCTGATGTTTATTCTCCAGCAGCTGATGAAGTTGGAAAAATACACTTAATTGCAGATGAAAAGGTTCAAGGAGCTGTTTTTGATCTTCCGGAGGAGATTGCAAAAGAGTTACTCACTAAGGAGGTACCACCAGGCAACACTATTTCCAAGATCACCAAGTTACCTCCTTTGCAAGATGATGGACCTGCAAGCGATTTCTATGGGAGGTTCTCTGACGACAGAGAACAAGGAAGTTCTAGAAATCGGGGAGGAGGTTTTAAGAGCTCACGATCATGGGGAGGTAGTGGCCGAAACTCTGACGATGACTTTGGTGATTCATATGGGAGAGGTGGCGGTAGAGGTTACAGATCTGGCAACAACAGGTCTCAATCAAGGAGAAGTGGTGGAGATGACTGGCTAATTGGAGGTAGAGGATCAAGCAGGTCTTCATCAAACAGAGGTGGCTATGGAGGAGGGAGCTACGGAGGAGGGGCAGGGGCCTGTTTTAATTGTGGACAATCTGGGCATAGGGCAGCAGAATGTCCTAAGAAGAGAGACTTTTTTTAG 2268 0.4383 MASIIGVSSIYQTPSLELLKRQQTNPSVSLKPLSFDNKSHFNTVLRAHLNNRTLSAIATNNSSVLSEEAFNGLGFDDVTRDDDELRGFEYENGNPSSVPVSKDELDVSKLDLPSRLIQSLNKRGITHLFPIQRAVLLPALEGKDIIARAKTGTGKTLAFGIPILKGLSDDDRNSLRRGRLPKALVLAPTRELAKQVEKEINESAPYLSTVCVYGGVSYVTQQSSLSRGVDVVVGTPGRIIDLINGNSLKLNEIEYLVLDEADRMLAVGFEEDVETILQTVPVERQTMLFSATMPGWVQKLSRKYLKKPLTIDLVGNEEEKLAEGIKLYAMSATSTSKRTVLSDLVTVYAKGGKTIVFTQTKKDADEVSLSLTNIISSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKLGTAILMYTSSQRRTVRSLERDVGCKFEFISPPAIGEILESSAQQVVATLKLVHPESIEFFMPTAQKLVEEQGANALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDGDNSRRFLSARSVTGFLSDVYSPAADEVGKIHLIADEKVQGAVFDLPEEIAKELLTKEVPPGNTISKITKLPPLQDDGPASDFYGRFSDDREQGSSRNRGGGFKSSRSWGGSGRNSDDDFGDSYGRGGGRGYRSGNNRSQSRRSGGDDWLIGGRGSSRSSSNRGGYGGGSYGGGAGACFNCGQSGHRAAECPKKRDFF* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0581 755 MobiDBLite consensus disorder prediction 640 654 - -
Lan20g0581 755 Pfam DEAD/DEAH box helicase 129 300 IPR011545 GO:0003676|GO:0005524
Lan20g0581 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 466 IPR027417 -
Lan20g0581 755 PANTHER - 25 746 - -
Lan20g0581 755 Gene3D - 326 526 IPR027417 -
Lan20g0581 755 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 340 500 IPR001650 -
Lan20g0581 755 CDD GUCT_Hera 539 619 - -
Lan20g0581 755 Pfam GUCT (NUC152) domain 532 632 IPR012562 GO:0003723|GO:0004386|GO:0005524
Lan20g0581 755 SUPERFAMILY Retrovirus zinc finger-like domains 716 753 IPR036875 GO:0003676|GO:0008270
Lan20g0581 755 CDD SF2_C_DEAD 325 454 - -
Lan20g0581 755 Pfam Helicase conserved C-terminal domain 340 445 IPR001650 -
Lan20g0581 755 SMART helicmild6 365 445 IPR001650 -
Lan20g0581 755 MobiDBLite consensus disorder prediction 655 670 - -
Lan20g0581 755 ProSiteProfiles Zinc finger CCHC-type profile. 735 750 IPR001878 GO:0003676|GO:0008270
Lan20g0581 755 Gene3D - 730 753 - -
Lan20g0581 755 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 257 265 IPR000629 -
Lan20g0581 755 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 136 311 IPR014001 -
Lan20g0581 755 SMART ultradead3 124 328 IPR014001 -
Lan20g0581 755 MobiDBLite consensus disorder prediction 619 724 - -
Lan20g0581 755 CDD DEADc 116 312 - -
Lan20g0581 755 Pfam Zinc knuckle 734 750 IPR001878 GO:0003676|GO:0008270
Lan20g0581 755 Gene3D - 106 315 IPR027417 -
Lan20g0581 755 SMART c2hcfinal6 734 750 IPR001878 GO:0003676|GO:0008270
Lan20g0581 755 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 25 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0581 Lan-Chr20 4444231 4450652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0581 110 467 Eukaryotic Initiation Factors Gene Family AT1G72730 37.741 4.36e-64 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0581 - - vra:106757668 1029.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0931 4 11699613 11704583 Lan20g0581 20 4444231 4450652 PCT
Lan20g0581 20 4444231 4450652 Lan4g0931 4 11699613 11704583 PCT