Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0571 ATGGGAAGACACTCTTGCTGTTTTAAGCAGAAGCTTAGGAAGGGTCTTTGGTCTCCTGAGGAGGATGAAAAACTTCTGAACCATATTACTAAGCATGGCCATGGATGTTGGAGCTCTGTGCCTAAGCAAGCAGGTTTGCAAAGATGTGGTAAGAGTTGCAGGCTAAGGTGGTTAAACTACTTAAGGCCTGATTTAAAGAGAGGTACATTCTCACAAGAAGAAGAAAATCTTATCATTGAACTTCATGCAGTATTAGGGAACAGATGGTCTCAAATTGCGGCACAATTGCCCGGGAGGACTGACAATGAAATAAAGAATTTGTGGAACTCTTGCCTGAAGAAGAGACTGAGGCAAAGTGGTATAGATCCTGTGACACATAAACCACTATCTGAGGTTGAGAATGGAGAGGAAAATGGTAAGAGGAAAGAGAAAGCACCAGAAGTATCCAATGAATTGAATCTCCTGAAATCAGAAAGCTCCAAATCAGATGCAGCTTCATATGAGCAAAGAACATCTTCAATCTCTCCAAAAGCCTATGCACCTGAGATAGAAGGTTCTTCTCACAGCACCAAATTTTACACCAAAAGTGACACCAATTTGATAACTAACTGTTGCAGCAAGGACTTGTTCCAAGACAGGTTTATGACCAATTGCCACTCCTCTGATTTCATGGGGAATTTTCCAAATCAAATGAGTTATGCATCCACTGACTATATCCCAAATGATTCAAACTCCAGTCATTGGTTCAGCCAAACTTCAAGGCCTTTTGATATAAACTCTGAATATCCTTTCAATGCCACTTCTATTCTTACACCTACAACAAGCATGTATCTTCCAACTTTTAACTACAAACCTTTGGTTGTTCCCTCTGATAATATTTCTACATCCTATGGATCCCATTATTGGGAAGCTAGTGCCTTAAACAACAGCAATAGCAGCAATGGGAGTAATAGCAGCACAGAGTTAAGAAGTAGCAGCCCTTTAAATGTACACAACAATATATTTTCTTCTTGGGGAATGGCAGATTGTAGCACCTCTACTAAAGAGGCACAAATTCATATGATGGAAAATCAGATAGAAGAAGCAAAGTGGAATGAGTATCTTCATAATCCAATGCCAATGCTGGCTTCTATGCAAAGTCAAAATCATGTTCCTGAAACTTTATGCAATGAGATAAAGCCTACCACACATTTTATGCCTGAAACTTTAGGGGCTATATTACCTCATAATCATACTAAGCAGCAAGAACTGTCACAAAGTTCTAGTATCATTTCCAAGGAAATTCAGAAGCTCACATCAGCATTTGGACATATATAG 1317 0.3933 MGRHSCCFKQKLRKGLWSPEEDEKLLNHITKHGHGCWSSVPKQAGLQRCGKSCRLRWLNYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKRLRQSGIDPVTHKPLSEVENGEENGKRKEKAPEVSNELNLLKSESSKSDAASYEQRTSSISPKAYAPEIEGSSHSTKFYTKSDTNLITNCCSKDLFQDRFMTNCHSSDFMGNFPNQMSYASTDYIPNDSNSSHWFSQTSRPFDINSEYPFNATSILTPTTSMYLPTFNYKPLVVPSDNISTSYGSHYWEASALNNSNSSNGSNSSTELRSSSPLNVHNNIFSSWGMADCSTSTKEAQIHMMENQIEEAKWNEYLHNPMPMLASMQSQNHVPETLCNEIKPTTHFMPETLGAILPHNHTKQQELSQSSSIISKEIQKLTSAFGHI* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0571 438 MobiDBLite consensus disorder prediction 122 176 - -
Lan20g0571 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan20g0571 438 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan20g0571 438 SMART sant 13 63 IPR001005 -
Lan20g0571 438 SMART sant 66 114 IPR001005 -
Lan20g0571 438 CDD SANT 17 61 IPR001005 -
Lan20g0571 438 MobiDBLite consensus disorder prediction 152 176 - -
Lan20g0571 438 PANTHER MYB DOMAIN PROTEIN 55 1 431 - -
Lan20g0571 438 PANTHER HOMEODOMAIN-RELATED 1 431 - -
Lan20g0571 438 MobiDBLite consensus disorder prediction 129 149 - -
Lan20g0571 438 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan20g0571 438 Gene3D - 68 146 - -
Lan20g0571 438 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lan20g0571 438 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan20g0571 438 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lan20g0571 438 Gene3D - 11 67 - -
Lan20g0571 438 CDD SANT 69 109 IPR001005 -
Lan20g0571 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0571 Lan-Chr20 4394910 4396815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0571 1 159 MYB Transcription Factor Family AT4G01680 79.245 3.11e-90 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan20g0571 Myb_DNA-binding 4e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0571 20 4394910 4396815 Lan4g1343 4 22293664 22295584 LSH
Lan4g0936 4 11754507 11756457 Lan20g0571 20 4394910 4396815 PCT
Lan20g0571 20 4394910 4396815 Lan4g0936 4 11754507 11756457 PCT