Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0569 ATGGCTGAGAAGATGCTTGACTCTACCCAAGCAGAGATGACAAGAAGCTCCTTCAATCCACCCTCCATTTATGGCAATGATTCACATGAGCTGGTATGGGAAAATGGCCAAGTTCTTGTGCATGGAGGTTCAAATAAAAGACCAGCTGCTACTGAAAGTGGTTACATATTCACACCTTTCAAACAACACTGTTTATCTTCAACTCCACTCAAGAAACCAAGGATTCATTCAAACCAAATTACACCAGCAACAAAAAATGTTTTAAGACCTCCACTGTTTCTTAAATCTACTCACAACGAAAACAGTGCCACAACAGATAATACTACAGTTTTAGCAAGTATGGAGCATATTAAAGCAACAAAGGTTGGGAAAACAGCTACTAGTAGCAAAACTATTGATCATGAATCAGTAGTGATTGATTCATCTAAAGGATCACATGGTTTCAGAGAACTTAAAGGGAAAACACCTTTAGTTTCTGACACATCTAATCAAGTACCCTTTGTTGCAAGAAGTGTGGAACCACTTCCTGATGAGATTTCTGAAACAACAGGTTATAAAAGTGCCCTTCATGGTTCCCATGCACAATATTATAACCAAACCTCAACTTCAGAAGGACTTGGAGCAAAGGTAAAAGCTGCTACTACCTTTTGTAATGAATGCTTGCTACAATCTTCTTCTGTATGCTCTCTTGGAGCATCAAACAACACAAACCTTTGTAGCATGAAAAATGAGGAGACTGATGAGTCAACATATTTAAGTGATAATGATGAAGAACAAGAAGTGGTGAAGGAAAAGCTTGCATGGGAGGGCAAACACACCCGGGTCAAGAGAAGAAGGGATACAAAGATTCAGAGATTAAATGAAATGAAGAGAAGAGATAGAATCAACAAGAAGATGCGTGTATTAAAAGAGCTCATACCTAATTGCAATAAGGTTGACCAAGCTTCAATGCTTGATGATGCCATCAAATATCTTAAGACCTTGAAGTTTCAGTTACAGATTATGTCAATGAGTAGAGGATTATATATGCCTCTTATGATGTTACCTAGTGCTGCTCATTACTTATTGGGAGCTGGAATGGGTTTCAGGCCAGGAACAAACATTCCTCAGTACCCTATTCCTCCATTGCTACCTGGCATGTTTGGTTTTCCTAACCAAATGCCACCCATGCCCATGCCTATGTTTGGAAATCCTTCTACACAACCAATTCACCCAACAAATATAGCTACCAACTTAGGAGAGAATCTAGCTTCAGTTCCCAAGAGTTTTTATTTTGATGGATAG 1284 0.3894 MAEKMLDSTQAEMTRSSFNPPSIYGNDSHELVWENGQVLVHGGSNKRPAATESGYIFTPFKQHCLSSTPLKKPRIHSNQITPATKNVLRPPLFLKSTHNENSATTDNTTVLASMEHIKATKVGKTATSSKTIDHESVVIDSSKGSHGFRELKGKTPLVSDTSNQVPFVARSVEPLPDEISETTGYKSALHGSHAQYYNQTSTSEGLGAKVKAATTFCNECLLQSSSVCSLGASNNTNLCSMKNEETDESTYLSDNDEEQEVVKEKLAWEGKHTRVKRRRDTKIQRLNEMKRRDRINKKMRVLKELIPNCNKVDQASMLDDAIKYLKTLKFQLQIMSMSRGLYMPLMMLPSAAHYLLGAGMGFRPGTNIPQYPIPPLLPGMFGFPNQMPPMPMPMFGNPSTQPIHPTNIATNLGENLASVPKSFYFDG* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0569 427 Pfam Helix-loop-helix DNA-binding domain 286 328 IPR011598 GO:0046983
Lan20g0569 427 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 418 - -
Lan20g0569 427 SMART finulus 285 334 IPR011598 GO:0046983
Lan20g0569 427 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 279 328 IPR011598 GO:0046983
Lan20g0569 427 MobiDBLite consensus disorder prediction 1 20 - -
Lan20g0569 427 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 286 354 IPR036638 GO:0046983
Lan20g0569 427 Gene3D - 273 337 IPR036638 GO:0046983
Lan20g0569 427 PANTHER TRANSCRIPTION FACTOR PIF3 1 418 IPR044273 GO:0003700|GO:0006355
Lan20g0569 427 CDD bHLH_AtPIF_like 279 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0569 Lan-Chr20 4363811 4365698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0569 212 399 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 41.414 6.04e-36 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan20g0569 HLH 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0569 K12126 - gmx:100818543 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0937 4 11770898 11773778 Lan20g0569 20 4363811 4365698 PCT
Lan16g0955 16 16622533 16626467 Lan20g0569 20 4363811 4365698 PCT
Lan20g0569 20 4363811 4365698 Lan4g0937 4 11770898 11773778 PCT
Lan20g0569 20 4363811 4365698 Lan16g0955 16 16622533 16626467 PCT