Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0566 ATGAGAAAAAACTCTAGTTCTAATTCCTCATCATCTATCAATAGCAACAACATGAACCCTTTTATCTCAACTGCATCCTCTCTCACATACCAAAATAGTGAAGAACTTCATACAGATCTTAGGCTTGGGCTCAGCATTCCCACCACTCAACATGTTGGCACTTCTATGTCAAGGGGGCAGTGGCAACAAATGCAGGCACATCTAAGTAGTTCATCACAAGGTGCTGAAGTAAATGATTGCATTGATCATGGAAACTTCTTTGTGAAGGTGTATATGGAAGGCATTCCTATTGGCAGAAAACTCAATCTATTAGCTCATGATGGGTACCTAGAGTTAGTGAGAACTCTTGAACAAATGTTTGACACTACCATTCTATGGGGGAATGAGATGGATAGAGTACAACCAGAGAGATGTCATGTGCTAACATATGAGGATGGAGAAGGAGATTTGATTATGGTTGGTGATGTTCCTTGGAAGATGTTCTTATCAAGTGTAAAGAGGTTGAAGATCACAAGGGTTGATGCATTTGGGTGTTAA 537 0.4004 MRKNSSSNSSSSINSNNMNPFISTASSLTYQNSEELHTDLRLGLSIPTTQHVGTSMSRGQWQQMQAHLSSSSQGAEVNDCIDHGNFFVKVYMEGIPIGRKLNLLAHDGYLELVRTLEQMFDTTILWGNEMDRVQPERCHVLTYEDGEGDLIMVGDVPWKMFLSSVKRLKITRVDAFGC* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0566 178 SUPERFAMILY CAD & PB1 domains 81 170 - -
Lan20g0566 178 Pfam AUX/IAA family 76 172 IPR033389 -
Lan20g0566 178 Gene3D - 80 177 - -
Lan20g0566 178 ProSiteProfiles PB1 domain profile. 85 175 IPR000270 GO:0005515
Lan20g0566 178 PANTHER AUXIN-INDUCED PROTEIN 7 177 - -
Lan20g0566 178 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 177 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0566 Lan-Chr20 4331082 4332691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0566 89 170 B3 DNA Binding Superfamily AT4G23980 41.463 7.44e-13 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan20g0566 AUX_IAA 9.3e-28 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0566 K14484 - gmx:100781660 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0381 8 5969781 5971312 Lan20g0566 20 4331082 4332691 LSH
Lan16g0954 16 16606668 16608256 Lan20g0566 20 4331082 4332691 PCT
Lan20g0566 20 4331082 4332691 Lan16g0954 16 16606668 16608256 PCT