Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0563 ATGAAAATAAACATAATTGTCTCAGTTGTTTCCCTCATCCTTGTGGTGGGTGTTGTGATAGCCAACATTGTTATCAACCATAAGGGCAACAACAGTAGCACAAACCCCAATGTTAAAGCTAATTATTCAAGGGTGGAGAAGATTTGCCAAAGTGCAGAGCAAAAAGATCTTTGTGTTCAAACCCTAAGCACTGTGAACGAAGCCTCAGACCCTAAAGAATACGTTGCAGCAATTGTGAAAGCAACCACTGAGAGCGTCAACAAGGCATTTAACATGAGCGACAAGCTTTCAGTGGAACATGGAGAAAAGGACCAAGGTATCAAGATAGCCCTTGACCATTGCAAGGACATGTTGCAATTTGCATTAGACAGCCTTCAGCTTTCAACGGACTTGGTCGGTGGCAAAGACATTAAACAAGTGCATGACCAATCCGCTGACTTCAGCAACTGGTTGACTGCTGTTATCTCACACCAACAAACTTGCTTGGATGCATTTGACAATGACAAACATGATGAGAAAGCAGTGAAGGAACTACTCAACAATGAAAACTTGGACCATGTAGGTAAAATCACCGGTGTTGCCCTTGACCTTGTGGCTGATTTGACAAACATCCTTCAAGAATTCGGATTGCAGTTGGAATTGAAACCTTCCTCTCGCCGCCTTCTCGGTGCGGAGGAGGTTGACGGAGAAGGACTCCCGACATGGTTATCTGCCTCCGATCGCAAGCTCTTGGCTAAGGTCAGGATGAACAAGAATGCACCAATGACAACTGTTATGGTGGCCAAGGATGGCAGTGGCCAATTTAGAACCATTATGGAAGCCATTGACGCTTATCCTAAGGGCTTGCAAGGCAGGTACGTTATCCATGTTAAGGCTGGGGTCTATCCTGAGTTCATCATTGTTCCCAAAAATGCTGTAAATATTCTTATGTATGGTGATGGCGCTTTAAACACTGTTATCACTGGTCACAAGAACAAACATCTTGATGGTATCGACATCATGAATGGTGCAACATTTGCCAATGAAGCTTATGGATTTATTGCAAAGGGAATTACATTCGAGAACACTGCTGGCCCAGAGGGACACCAAGCTGTAGCACTAAGAAACCAAGGAGATATGTCAGCTTTCTTCGATTGTCATATTGTGGGTTACCAAGACACTTTGTGGGCACAAGCCAATCGTCAATTCTATCGTAACTGTGAAATCTCTGGCACCATTGACTTCATCTTTGGCACATCAGCTACCATGATCCAAGACTCCAAAATCATTGTGAGGAAACCCAACATAAGCATGAAACAAGTAAATGTAATCACTGCAGACGGCACACAACAAAGGAGCATGAATTCAGGAATTGTGCTCCAGGGCTGTGAGATTGTCCCAGAAGCTGAATTGTTACAAGTAAAATCTGAAATCAAATCATACTTGGGTAGGCCCTGGAAGGCTCTAGCAAGGACAGTGATTATGGAATCAAATATTAGTGACATTATTCAACCAGAGGGTTGGATGTATCACCCTAATAATATTGGGTTCCTTAATACTTTGTACTATGCTGAGTATGGTAACACTGGAGTTGGTGCTGACACTAAGGAAAGAGTGAAGTGGCCAGGTTATCATCCAACAATTAGTACTAATGAAGCTCATAGATTCACTGCTAGACAGGTACTTCAAGCTGGACCCACTAGCAAAGCAGAAGATTGGTTGAGAGCTACTGGCGTTCCTTTTACCCTTGGATTCCGCAAGTAA 1743 0.4332 MKINIIVSVVSLILVVGVVIANIVINHKGNNSSTNPNVKANYSRVEKICQSAEQKDLCVQTLSTVNEASDPKEYVAAIVKATTESVNKAFNMSDKLSVEHGEKDQGIKIALDHCKDMLQFALDSLQLSTDLVGGKDIKQVHDQSADFSNWLTAVISHQQTCLDAFDNDKHDEKAVKELLNNENLDHVGKITGVALDLVADLTNILQEFGLQLELKPSSRRLLGAEEVDGEGLPTWLSASDRKLLAKVRMNKNAPMTTVMVAKDGSGQFRTIMEAIDAYPKGLQGRYVIHVKAGVYPEFIIVPKNAVNILMYGDGALNTVITGHKNKHLDGIDIMNGATFANEAYGFIAKGITFENTAGPEGHQAVALRNQGDMSAFFDCHIVGYQDTLWAQANRQFYRNCEISGTIDFIFGTSATMIQDSKIIVRKPNISMKQVNVITADGTQQRSMNSGIVLQGCEIVPEAELLQVKSEIKSYLGRPWKALARTVIMESNISDIIQPEGWMYHPNNIGFLNTLYYAEYGNTGVGADTKERVKWPGYHPTISTNEAHRFTARQVLQAGPTSKAEDWLRATGVPFTLGFRK* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0563 580 Pfam Pectinesterase 258 556 IPR000070 GO:0030599|GO:0042545
Lan20g0563 580 Pfam Plant invertase/pectin methylesterase inhibitor 45 196 IPR006501 GO:0004857
Lan20g0563 580 PANTHER PECTINESTERASE 7 578 - -
Lan20g0563 580 SUPERFAMILY Pectin lyase-like 256 576 IPR011050 -
Lan20g0563 580 Gene3D - 252 578 IPR012334 -
Lan20g0563 580 CDD PMEI-like_3 48 203 - -
Lan20g0563 580 ProSitePatterns Pectinesterase signature 2. 402 411 IPR033131 -
Lan20g0563 580 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 203 IPR035513 -
Lan20g0563 580 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 201 IPR035513 -
Lan20g0563 580 TIGRFAM PME_inhib: pectinesterase inhibitor domain 32 181 IPR006501 GO:0004857
Lan20g0563 580 PANTHER PECTINESTERASE 7 578 - -
Lan20g0563 580 SMART PMEI_2 40 197 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0563 Lan-Chr20 4275137 4278421 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0563 5 578 Carbohydrate Esterase AT2G47040 37.480 8.41e-124 375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0384 8 6001557 6004883 Lan20g0563 20 4275137 4278421 LSH
Lan20g0563 20 4275137 4278421 Lan16g0947 16 16548402 16551088 PCT
Lan20g0563 20 4275137 4278421 Lan2g0243 2 1993557 1996264 PCT