Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0562 ATGAAAGGAAAAATAATTGTCTCTGCTGTTTCTCTCATCCTTGTGGTAGGTGTTGTGATTGGTGCGGTTGTCATCAACCACAATAATAGCACCACAAACACTGATCTTAAATCAAATGTGAAGGCTGCTGAGAAGATTTGCCATAGTGCAGAACAAAAAGACCTTTGTGTTCAAACCCTAGGCACCGTGAAGGAAACCTCAGACCCTAAAGAATATGTAGCAGCGGTTTTGAAAGCAAGCACAGAGAGTGTCATCAAGGCCTTCAACATGAGCGACAGGCTTGTAGTGGAACATGGAAACAAAGGCGAAGGTATCAAAATGGCCCTTGATGATTGCAAGGACTTGTTGCAATCCGCATTGGAAAGCCTTCAGCTCTCAACTGACTTGGTTGGTGGAAATAACGTTAAACAAGTGCATGACCAAACTGCTGATTTCAGAAATTGGTTGACTTCTGTTATCTCATACAAACAAGCTTGCTTGGAAGGGTTTGATGATGGCAATGAGGGTGAGAAAGCAGTTAAGGAACTATACAAAACTGACAGTTTGGACCATATAGGTCAAATCACTGGTGTTGCCCTTGACATTGTGGCTGATTTGTCAAACATCCTTCAAGAATTCGGGTTGCAGTTGGATTTGAAACCTGCATCTCGCCGCCTTCTCGGCGCAGAGGAGATCGACGAAGAAGGACTCCCCACGTGGTTGTCCGCCTCCGATCGCAAGCTCTTGGCTAAGGTTGGAAAGAAGGGTGGTAAGAAAAATTTTGGTGGCAAAAATAAGGGCAAGGGTAAAGGTAAAGGTAAAGGTAAGGGTAAGGCTGCTGCTGGAGCTGCTGCTGGAGCTGCTGCCGGAGCAGCTGCTGGAGCTGCCGTCGGTGTGGCTGCAGGTGCCGGTATTGCTGCTGCTTCAGGACCAGCTGCAAGAACCATTGTGGTGGCCAAGGATGGCAGTGGCCAATTTAGAACCGTTAAGGAAGCCATTGATGCTTACCCTAAGGGCTTGCAAGGGAGATATGTTATCTTTGTTAAGGCTGGGGTGTATGATGAGTACATCACTGTTCCCAAGTATGCAGCAAATATCCTTATGGTTGGTGATGGCCCTTATAAGACCATTATCACTGGTAGAAAGAACTTTGCTCTTGCTGGTATCAAAACCATGATGACTGCCACATTTGCCAACACTGCACCTGGATTCATTGCAAAGGGAATTACATTCGAGAACACTGCTGGTATAGAAGGACATCAAGCTGTTGCACTCAGAAACCAAGGAGATATGTCAGCCTTCTTCGATTGCCACATTGTTGGTTATCAAGATAGTTTGTATGTCCAAACCAATCGTCAATTCTACCGTAACTGTGAGATCTCTGGCACTATCGACTTCATCTTTGGTACATCAGCCACCTTGATCCAAAACTCAAGAATCATTGCCAGAAAGCCCAAAGCAAGTCAATTCAACACAATCACCGCAGATGGCACAGAACATAGAACCATGAATTCAGGAATTGTGCTCCAGGGTTGTGAAATTGTTGCTGAGGCTGGTCTTGTTCCATCTCAAAACCCATCATACTTCGGTAGGCCATGGAAGGCTTATTCCACAGCAGTTATTATGGAATCAAATATTGGTGGGTTTATTCACCCAGATGGATGGAAAGAATGGGAAGGTGCACCAGGAGGATTCACTGGTACCTTGTACTTTGTTGAGTATGCCAACACTGGACCTGGTTCCAATGTTGCTGGAAGAGTTAGGTGGAACACTTTGCATACAAGAATTAGTCCCCAAGAAGCAGCTAAATACACTGCTGGACAATTTCTTGCAGCTGGACCTGCTAGCAAAGCTGAGGATTGGTTGAAAGCTACTGATGTTCCTTTTGCCCTTGGCTTCACCAAGTGA 1887 0.4547 MKGKIIVSAVSLILVVGVVIGAVVINHNNSTTNTDLKSNVKAAEKICHSAEQKDLCVQTLGTVKETSDPKEYVAAVLKASTESVIKAFNMSDRLVVEHGNKGEGIKMALDDCKDLLQSALESLQLSTDLVGGNNVKQVHDQTADFRNWLTSVISYKQACLEGFDDGNEGEKAVKELYKTDSLDHIGQITGVALDIVADLSNILQEFGLQLDLKPASRRLLGAEEIDEEGLPTWLSASDRKLLAKVGKKGGKKNFGGKNKGKGKGKGKGKGKAAAGAAAGAAAGAAAGAAVGVAAGAGIAAASGPAARTIVVAKDGSGQFRTVKEAIDAYPKGLQGRYVIFVKAGVYDEYITVPKYAANILMVGDGPYKTIITGRKNFALAGIKTMMTATFANTAPGFIAKGITFENTAGIEGHQAVALRNQGDMSAFFDCHIVGYQDSLYVQTNRQFYRNCEISGTIDFIFGTSATLIQNSRIIARKPKASQFNTITADGTEHRTMNSGIVLQGCEIVAEAGLVPSQNPSYFGRPWKAYSTAVIMESNIGGFIHPDGWKEWEGAPGGFTGTLYFVEYANTGPGSNVAGRVRWNTLHTRISPQEAAKYTAGQFLAAGPASKAEDWLKATDVPFALGFTK* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0562 628 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 197 IPR035513 -
Lan20g0562 628 Pfam Pectinesterase 309 604 IPR000070 GO:0030599|GO:0042545
Lan20g0562 628 Coils Coil 33 53 - -
Lan20g0562 628 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 201 IPR035513 -
Lan20g0562 628 SMART PMEI_2 38 195 IPR006501 GO:0004857
Lan20g0562 628 CDD PMEI-like_3 46 201 - -
Lan20g0562 628 SUPERFAMILY Pectin lyase-like 304 622 IPR011050 -
Lan20g0562 628 Gene3D - 303 626 IPR012334 -
Lan20g0562 628 PANTHER PECTINESTERASE 303 626 - -
Lan20g0562 628 PANTHER PECTINESTERASE 3 247 - -
Lan20g0562 628 PANTHER PECTINESTERASE 3 247 - -
Lan20g0562 628 PANTHER PECTINESTERASE 303 626 - -
Lan20g0562 628 TIGRFAM PME_inhib: pectinesterase inhibitor domain 24 175 IPR006501 GO:0004857
Lan20g0562 628 ProSitePatterns Pectinesterase signature 2. 453 462 IPR033131 -
Lan20g0562 628 Pfam Plant invertase/pectin methylesterase inhibitor 44 195 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0562 Lan-Chr20 4263584 4266064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0562 1 626 Carbohydrate Esterase AT2G47040 36.173 6.92e-123 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0562 K01051 - gmx:100775246 442.195