Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0560 ATGAGTTGTTTCAACTGTTGCGAAGAGGATGAGTACAACAAGGCTGCTGAAAGTGGAGGACCATATGTCGTGAAAAATGCAGCAGGAAATGACGGGAATTATCATGCTTCTGAAACTGCAAAGCAGGGTGCTCAGACTGTTAAAGTCCAGCCCATTGAAGTTCCTTCTATACCAGCGGATGAACTAAAAGAAGTTACAGATAACTTTGGGCAAGATTCTTTGATTGGAGAGGGATCCTATGGAAGAGTATATTATGGCATTCTTAAAAGTGGGCAGGCCGCAGCAATCAAGAAATTAGATTCGAGTAAACAGCCTGACCAGGAATTTTTAGCACAGGTTTCAATGGTATCAAGGCTGAAACATGAAAATTTTGTCCAGTTGCTGGGTTACTGTGTTGATGGAAACTCCCGTATTCTTGCTTATGAGTTTGCATCTAATGGATCTCTTCATGATATTTTACATGGCAGAAAAGGTGTTAAAGGAGCACAACCTGGCCCTGTTTTAACGTGGGCACAGAGAGTAAAAATTGCTGTAGGTGCTGCAAGAGGGCTTGAATATTTGCATGAGAAGGCTGATCCCCACATTATTCACCGGGATATCAAGTCCAGCAATGTACTAATCTTTGAAGATGATGTTGCTAAAATTGCAGATTTTGATTTGTCAAATCAGGCTCCTGACATGGCTGCACGTCTTCATTCCACTCGTGTCCTTGGAACCTTTGGTTATCATGCACCAGAATATGCAATGACTGGACAATTGAATGCAAAGAGTGATGTGTACAGTTTTGGTGTTGTTCTTCTGGAACTTTTGACTGGAAGGAAACCTGTTGATCACACACTACCACGTGGACAGCAGAGTCTGGTTACTTGGGCTACACCAAGACTCAGTGAGGACAAAGTCAGGCAGTGTGTTGATACAAGACTAGGAGGAGAATACCCACCCAAAGCTGTTGCTAAGATGGCTGCTGTTGCTGCATTGTGTGTGCAATATGAAGCTGATTTTAGACCAAACATGAGCATTGTAGTCAAAGCTCTTCAACCTTTGTTGACTGCACGACCTGGACCTGCTGGTGAAACACCAAGTTAA 1086 0.43 MSCFNCCEEDEYNKAAESGGPYVVKNAAGNDGNYHASETAKQGAQTVKVQPIEVPSIPADELKEVTDNFGQDSLIGEGSYGRVYYGILKSGQAAAIKKLDSSKQPDQEFLAQVSMVSRLKHENFVQLLGYCVDGNSRILAYEFASNGSLHDILHGRKGVKGAQPGPVLTWAQRVKIAVGAARGLEYLHEKADPHIIHRDIKSSNVLIFEDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSEDKVRQCVDTRLGGEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLTARPGPAGETPS* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0560 361 SUPERFAMILY Protein kinase-like (PK-like) 48 345 IPR011009 -
Lan20g0560 361 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0560 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Lan20g0560 361 SMART serkin_6 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0560 361 CDD STKc_IRAK 75 348 - -
Lan20g0560 361 Pfam Protein tyrosine and serine/threonine kinase 73 345 IPR001245 GO:0004672|GO:0006468
Lan20g0560 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 359 - -
Lan20g0560 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 359 - -
Lan20g0560 361 Gene3D Phosphorylase Kinase; domain 1 30 143 - -
Lan20g0560 361 PIRSF ILK 11 352 - -
Lan20g0560 361 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Lan20g0560 361 Gene3D Transferase(Phosphotransferase) domain 1 144 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0560 Lan-Chr20 4247889 4251862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0560 60 346 Receptor kinase-like Gene Family AT4G02010 52.234 3.60e-92 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Lan20g0560 PK_Tyr_Ser-Thr 6.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0560 K13436 - gmx:100808383 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0385 8 6005836 6009666 Lan20g0560 20 4247889 4251862 LSH
Lan4g0942 4 11827424 11830530 Lan20g0560 20 4247889 4251862 PCT
Lan2g0240 2 1973861 1977359 Lan20g0560 20 4247889 4251862 PCT
Lan20g0560 20 4247889 4251862 Lan4g0942 4 11827424 11830530 PCT
Lan20g0560 20 4247889 4251862 Lan2g0240 2 1973861 1977359 PCT