Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0559 ATGGAAGCTAGATTTGGAACAGAAGCATATAGTTATTATGGGATAGGTGATGGTTCCACTGATTTGAGAGGTTTGGGGAAGAGATCCACAGAGTGGGATTTGAATGAGTGGAGATGGGATGGTGATCTATTTTTAGCCAGCCGGTTGAATCCGACTGCGGCTGGTGGTGTGGGTGGGCAGCAGTTTTTCCCTCTTGGGTCAGGGATCCCTGTTGCTGCGGTTGGGGGTTCTGGTTCCCCCAACAGTTCTTCTTCCTGCTATGAGGAAGCAGATCTTGGGAATCAAAAAGGGAACAAGGAAGGGGAGAGGAAAAGGAGGGTAATTGTGTTGGAGGATGGTGGTTTGAATGAGGAGGCAGGTGCCCTTAGCTTAAAGCTTGGAGGCCGTGGAGAACCTTTGGCACATAGGGAGGTTGCAAGCTGGGATGGTGTGAATGGCAAGAAAAGCAGAGTCGGTGGAGGTACTTCGAATCGAGCCGTTTGTCAGGTGGAAGATTGTGGTGCAGATCTGACCAAAGCTAAAGATTATCACCGGCGCCATAAAGTTTGTGAAGTTCACTCCAAGGCTACTATGGCGCTTGTGGGAAATACAATGCAGAGGTTTTGTCAACAATGTAGTAGGTTTCACTTGCTTCCAGAGTTTGATGAAGGGAAGAGAAGCTGTCGAAGACGTCTGGCAGGCCATAATAAACGTAGAAGGAAAACAAATGAGGAAGCTGTTCCAAATGGAAGTACACTCAATGATGATCACACTAGCAGTTATCTGTTGATAAGATTATTGAAGATACTTTCAAATATTCATACTGACAGGTCAAATCAGACTACGGATCAGGATGCGCTAACTCATCTTCTAAGGAGTATTGCTAGTCAGAATGATGAACAAGGGGGCAAGACCTTGTCTAACCTTTTGCAGGTACCAGAGAATTTGTTGAAAGAAGGGGGTTCATCTGGGAAGTCAGAGATGGTCTCAACATTATTCTCCAACGGTTCTCAAGGGTCTCCAACTGCTATAAGGCAACATCAAATGGTATCTGTGAGTAAAATGCAACAACAAGTGATGCTTACACATGATGTTAGGGTTATTGATCACCAAACTATATCATCTACTAAGCCCAGCATTACAAACAGCCCTCCATCTTCCTCAGAAGCCAGGGACAGTTCTGCTGGACAGGTTAAGATGAATAATTTTGATTTGAATGACATATATATTGACTCAGATGACGGCACAGAAGATCTAGAAAGATTGCCCATCTCTACAAATCAAGGGACTAGCTCTCTTGACTACCCATGGGCACACCAAGATTCTCATCAGTCAAGTCCACCTCAAACAAGTAGAAATTCAGATTCTGCATCTGCCCATTCCCTTTCTAGTTCTAGTGGAGAAGCGCAGAGCCGCACAGATCGAATTGTTTTTAAACTCTTTGGTAAAGAGCCAAATGATTTTCCTCTAGTACTTAGAGCACAGATTCTTCACTGGTTATCCCACAGTCCAACTGATATAGAGAGCTATATACGGCCTGGTTGTATTGTTTTGACCATTTATATGCGTCAGGATGAGGCTGTGTGGGATGAACTTTGCTACAATCTGAGTTCCAATTTGAATAGGCTGCTCAATGTCTCAGAGGATTCTTTTTGGAGAACTGGATGGGTTCACATCAGGGTGCAGAATCAAATAGCCTTCATTTTCAATGGTCAAGTTGTCATAGATAAATCCCTACCTTTCAAAGGTAACAATTATAGCAAGATTTTGAGTGTCAGTCCAGTTGCTGTACCAGCATCGAAACAAGCTCAATTTTCTGTTAAGGGTGTCAACCTGATAGACTCTGCCACTAGGTTAATATGTGCTTTAGAAGGGAAATATCTTCTCTGTGAAGATGCTCATGAGTCAATCGATCAACACTCCAAGGAGCTTGATGAGATCCAGTGCATCCAGTTTTCATGTTCTGTCCCTGTGATGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTTTTTCCTTTTATAGTGGCCGAGGAGGATGTATGCTCAGAAATCTGTTTGCTTGAGCCTCTATTAGAATTCAATGAAACTGATCCAGATACTGTTGGGACTGGAAAAATTGAAGCAAAATGTCAAGCCATGGATTTCATTCATGAAATTGGTTGGCTTCTTCACAGAAACCAAATGAAATCTAGGATGCTTCACTTGAACTCTAGTGCAGAACTCTTTCCGTTAAAACGGTTCAAGTGGCTCATGGAGTTCTCTATGGATCATGATTGGTGTGCAGTGGTGAAAAAGCTATTGAACCTGCTGCTTGATGGAACTGTGTATTCAGGAGACCACCCTTCCTTGTATCTTGCACTTTCAGAGATGACCCTCCTTCACAGAGCTGTAAGGAGAAATAGCAAGCAGTTAGTAGAGTTCCTTTTGAGGTATGTTCCTGAGAATATTTCTGATAAACTTGGAACTGAAGACAAGGCATTACATGGTGGAGAGAATAAGAGCTTCTTTTTTAAACCTGATGTTGCTGGTCCCGCTGGTTTGACACCTCTCCATATAGCAGCTGGGAAAGATGGTTCTGAGGATGTACTGGATGCTTTAACTAATGATCCTTGCATGGTGGGAATCAAAGCGTGGAAAAGTGCTCGTGACAGCACAGGCTCCACACCTGAGGATTATGCACGATTACGTGGCCATTATACTTACATTCACTTAGTGCAGAAGAAAATCAATAAGAAACAAGGACCACCACATGTGGTGGTTAAGATTCCCAGCACTGTGACAGAAAGCACTACAAACCAGAAGCAAAATGAGTCATCCACAACCTTTGAGATCGGAAAGGCTGAAGTAAAACGTGGCCAAGGTCTCTGCAAAGTTTGTGATACTAAATCATCTTGTAGAACTGCAGTAGGCAGGTCTTTGGTATATAGACCTGCAATGCTCTCAATGGTGGCCATTGCAGCAGTCTGTGTTTGTGTGGCCCTTCTGTTTAAGAGCTCGCCGGAAGTTTTATATGTATTCCAACCCTTCAGGTGGGAGTCATTGGAATTTGGTACATGCTAA 3057 0.4344 MEARFGTEAYSYYGIGDGSTDLRGLGKRSTEWDLNEWRWDGDLFLASRLNPTAAGGVGGQQFFPLGSGIPVAAVGGSGSPNSSSSCYEEADLGNQKGNKEGERKRRVIVLEDGGLNEEAGALSLKLGGRGEPLAHREVASWDGVNGKKSRVGGGTSNRAVCQVEDCGADLTKAKDYHRRHKVCEVHSKATMALVGNTMQRFCQQCSRFHLLPEFDEGKRSCRRRLAGHNKRRRKTNEEAVPNGSTLNDDHTSSYLLIRLLKILSNIHTDRSNQTTDQDALTHLLRSIASQNDEQGGKTLSNLLQVPENLLKEGGSSGKSEMVSTLFSNGSQGSPTAIRQHQMVSVSKMQQQVMLTHDVRVIDHQTISSTKPSITNSPPSSSEARDSSAGQVKMNNFDLNDIYIDSDDGTEDLERLPISTNQGTSSLDYPWAHQDSHQSSPPQTSRNSDSASAHSLSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILHWLSHSPTDIESYIRPGCIVLTIYMRQDEAVWDELCYNLSSNLNRLLNVSEDSFWRTGWVHIRVQNQIAFIFNGQVVIDKSLPFKGNNYSKILSVSPVAVPASKQAQFSVKGVNLIDSATRLICALEGKYLLCEDAHESIDQHSKELDEIQCIQFSCSVPVMNGRGFIEIEDQGLSSSFFPFIVAEEDVCSEICLLEPLLEFNETDPDTVGTGKIEAKCQAMDFIHEIGWLLHRNQMKSRMLHLNSSAELFPLKRFKWLMEFSMDHDWCAVVKKLLNLLLDGTVYSGDHPSLYLALSEMTLLHRAVRRNSKQLVEFLLRYVPENISDKLGTEDKALHGGENKSFFFKPDVAGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIKAWKSARDSTGSTPEDYARLRGHYTYIHLVQKKINKKQGPPHVVVKIPSTVTESTTNQKQNESSTTFEIGKAEVKRGQGLCKVCDTKSSCRTAVGRSLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFQPFRWESLEFGTC* 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0559 1018 SMART ANK_2a 787 817 IPR002110 GO:0005515
Lan20g0559 1018 SMART ANK_2a 844 874 IPR002110 GO:0005515
Lan20g0559 1018 ProSiteProfiles Zinc finger SBP-type profile. 158 235 IPR004333 GO:0003677
Lan20g0559 1018 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 19 1017 IPR044817 GO:0003677
Lan20g0559 1018 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 19 1017 - -
Lan20g0559 1018 MobiDBLite consensus disorder prediction 365 391 - -
Lan20g0559 1018 MobiDBLite consensus disorder prediction 410 461 - -
Lan20g0559 1018 MobiDBLite consensus disorder prediction 414 461 - -
Lan20g0559 1018 MobiDBLite consensus disorder prediction 76 91 - -
Lan20g0559 1018 SUPERFAMILY Ankyrin repeat 768 904 IPR036770 -
Lan20g0559 1018 MobiDBLite consensus disorder prediction 225 247 - -
Lan20g0559 1018 Gene3D - 152 222 IPR036893 GO:0003677|GO:0005634
Lan20g0559 1018 Pfam SBP domain 161 234 IPR004333 GO:0003677
Lan20g0559 1018 Gene3D - 760 920 IPR036770 -
Lan20g0559 1018 SUPERFAMILY SBT domain 159 239 IPR036893 GO:0003677|GO:0005634
Lan20g0559 1018 MobiDBLite consensus disorder prediction 76 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0559 Lan-Chr20 4235381 4241916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0559 1 1017 SBP-box Gene Family AT3G60030 53.179 0.0 965
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lan20g0559 SBP 2.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0559 - - lang:109336004 1980.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0386 8 6026413 6033111 Lan20g0559 20 4235381 4241916 LSH
Lan20g0559 20 4235381 4241916 Lan4g1348 4 22391389 22397339 LSH