Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0555 ATGGTGGCTGATGCAGAGCTTGTGTGTCAACAGAGCATGGCTATGTTGGATGTGAAGTATTTTCCAAACAAAGAGAACAAAGTTCATGAGATCGAAGGTGAAGATTCTGTTTCACCTCCAAATTTTGACCGAGTTCGTGCTACTGAGTTAGTCTCGGCCGAGTTATCTACTTCACAAGAAGATGTTGAGCCTGGTGAGAGAATTGCAGATGCTGCTCTAGAATCTGATGTTGTGCAATTTGTTCCCTGCATCCGATCCGGTAGTTTTGTCGACATTGGGCCACGAAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCTTCTCATCTGGGATTACTATACAACTTCCCTAAACCAAGTGCCTTTTATGGGGTGTTTGATGGTCATGGAGGATCAGAAGCTGCAGCTTATATAAGGAAAAATGTGATGAAGTTCTTTTTTGAAGATGTCAACTTCCCACAGACATCTGAAGTTGATAGTGAATTTTTACAAGAGCTTGAGAATTCCCTCACAGAGTCATTTCTTTTGGCTGATTCAGCTTTGGCAGATGACTGTAATGTGAACAGTTCATCAGGGACCACAGCCCTTACTGCTTTGATATTTGGAAGGCTTCTAATGGTGGCCAATGCTGGAGACTGCCGAGCAGTTCTCTGTCGTAAAGGGGAGGCCATCGACATGTCTCAAGATCACAGGCCTATTTACCCATCAGAACGGATGCGAGTTGAAGAATTGGGCGGTTTCATAGATGATGGTTATCTTAATGGGGTCTTATCCGTTACTCGAGCATTAGGCGACTGGGACATGAAGTTACCTAAGGGTTCATCCTCACCTTTGATCGCAGAGCCTGAGTTCCGGCAAGTTATTCTGTCCGAGGATGATGAATTCCTCATTATGGGATGCGACGGAATCTGGGATGTGATGTCAAGCCAGCATGCTGTTGGCCTTGTTCGCAGAGGCCTGAGGCGGCATGATGACCCAGAGCAGTGCGCAAGGGACCTGGTTATGGAAGCTTTACGCCTGAACACATTTGACAATCTCACTGTGATAATTGTATGCTTCTCTTCCCTTGATCACAGGGAATCATCCCCACCTCGCCAGCGAAAATTGAGATGCTGTAGCCTGTCTGCAGAGGCACTTTGTAACTTGAGAAGCTTGTTAGAAGGCAGTGCTAGCAACTGA 1185 0.4549 MVADAELVCQQSMAMLDVKYFPNKENKVHEIEGEDSVSPPNFDRVRATELVSAELSTSQEDVEPGERIADAALESDVVQFVPCIRSGSFVDIGPRRYMEDEHIRIDDLSSHLGLLYNFPKPSAFYGVFDGHGGSEAAAYIRKNVMKFFFEDVNFPQTSEVDSEFLQELENSLTESFLLADSALADDCNVNSSSGTTALTALIFGRLLMVANAGDCRAVLCRKGEAIDMSQDHRPIYPSERMRVEELGGFIDDGYLNGVLSVTRALGDWDMKLPKGSSSPLIAEPEFRQVILSEDDEFLIMGCDGIWDVMSSQHAVGLVRRGLRRHDDPEQCARDLVMEALRLNTFDNLTVIIVCFSSLDHRESSPPRQRKLRCCSLSAEALCNLRSLLEGSASN* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0555 394 PANTHER PROTEIN PHOSPHATASE 2C 1 373 IPR015655 GO:0004722|GO:0006470
Lan20g0555 394 PANTHER PROTEIN PHOSPHATASE 2C 49-RELATED 1 373 - -
Lan20g0555 394 SMART PP2C_SIG_2 100 355 IPR001932 -
Lan20g0555 394 Gene3D - 74 362 IPR036457 -
Lan20g0555 394 CDD PP2Cc 84 355 IPR001932 -
Lan20g0555 394 ProSitePatterns PPM-type phosphatase domain signature. 124 132 IPR000222 GO:0043169
Lan20g0555 394 ProSiteProfiles PPM-type phosphatase domain profile. 85 355 IPR001932 -
Lan20g0555 394 Pfam Protein phosphatase 2C 95 347 IPR001932 -
Lan20g0555 394 SUPERFAMILY PP2C-like 80 357 IPR036457 -
Lan20g0555 394 SMART PP2C_4 75 353 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0555 Lan-Chr20 4219918 4222548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0555 98 390 PP2C-type Phosphatase Gene Family AT3G62260 68.367 1.57e-148 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0555 K14803 - gmx:100819791 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0388 8 6039020 6041517 Lan20g0555 20 4219918 4222548 LSH