Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0552 ATGGACACAGACTACACAAAGAGTGTTCACATGATGAGGGGTTTATCAGATTGTGGTTCATCAGCAGCATATGCAAAGGAAGAAGAGGTTGTAATGAAGAAAGGTCCATGGACACAGGAAGAGGATTCTGTTCTAATCAACTACGTCAACGTCCACGGTGAAGGTCACTGGAACTCCATCGCTGGCATTGCAGGTCTAAAGCGAACTGGCAAAAGCTGCAGATTAAGATGGTTAAACTACTTACGTCCAAATGTTCGACGTGGGAACATCACCCTCCATGAACAGCTTCTGATTCTCGACCTTCATTCACGCTGGGGCAATCGGTGGTCTAAAATAGCAGAACAAGTACCTGGGAGAACGGACAATGAAATAAAAAACTATTGGAGGACAAGAGTAGTAAAGCATGCAAAGCAACTCAAATGTGATGTAAACAGCAAGAAGTTCAGGGACACCATTCGTTTTGTATGGATGCCACGCCTCATGGAGCAGATTCAAGCCTCTAATTTTGGCAGACAAGACCAAATAACTACTCTTTGTAGCAACACTAAAGCCCACACTGAACCTTGTGTAACCATGCCCAGCATGTTGTCAGTGCCTACTTCTTCAGATAGCGTGCCTTCAAATTTGATGGGTGGTGGTGGTAGCTGGTCATTATCAGATAGTTTTGAAAAGGGATCCACATCCACCCCATGCATATTGCAGCAGAGGGAGTACTCAGAAGTTGAACCTGGCAATGATTTTGGTGGTGTAGACATGTGGACTGATGAAAATATATGTTTCTTGCAACAGCTGTTTGCTGATGACTAA 807 0.4411 MDTDYTKSVHMMRGLSDCGSSAAYAKEEEVVMKKGPWTQEEDSVLINYVNVHGEGHWNSIAGIAGLKRTGKSCRLRWLNYLRPNVRRGNITLHEQLLILDLHSRWGNRWSKIAEQVPGRTDNEIKNYWRTRVVKHAKQLKCDVNSKKFRDTIRFVWMPRLMEQIQASNFGRQDQITTLCSNTKAHTEPCVTMPSMLSVPTSSDSVPSNLMGGGGSWSLSDSFEKGSTSTPCILQQREYSEVEPGNDFGGVDMWTDENICFLQQLFADD* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0552 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 136 IPR017930 -
Lan20g0552 268 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 20 184 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lan20g0552 268 SUPERFAMILY Homeodomain-like 32 128 IPR009057 -
Lan20g0552 268 CDD SANT 36 81 IPR001005 -
Lan20g0552 268 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Lan20g0552 268 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 20 184 - -
Lan20g0552 268 ProSiteProfiles Myb-like domain profile. 29 81 IPR001005 -
Lan20g0552 268 Gene3D - 33 86 - -
Lan20g0552 268 Pfam Myb-like DNA-binding domain 87 130 IPR001005 -
Lan20g0552 268 Pfam Myb-like DNA-binding domain 34 81 IPR001005 -
Lan20g0552 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 85 IPR017930 -
Lan20g0552 268 Gene3D - 91 132 - -
Lan20g0552 268 SMART sant 86 134 IPR001005 -
Lan20g0552 268 SMART sant 33 83 IPR001005 -
Lan20g0552 268 CDD SANT 91 130 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0552 Lan-Chr20 4189992 4191217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0552 20 268 MYB Transcription Factor Family AT2G47190 48.276 4.27e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan20g0552 Myb_DNA-binding 2.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0552 K09422 - gmx:100819467 325.094