Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0548 ATGGAGAAGAAGGATATGGTAGTGAACATGGAAGGTACAATAGGGAATTCTTCTTTACCTGGTTATAATCCATTTGGTAACGTGTTTGATTTCTGTGAAGTGGAAAAGAGCTCTTTAGGGTTTATGGAGTTATTGGGTGTTCAGGATTATGGTAATAGTCCTCAGTTTTTTGATTTACCACAACAACAATCATCAACTATGTCTGTGCCTAAGATGGTTCCATATGAGACTAATGGGAAAGAGTGTAACTCTGAGGTCTTGAATCATCAACCTGCCACTCCTAACTCCTCTTCAATTTCATCCGCATCCACCAGTGGAGCAGTTAATGATGAACACAATAAAGCTCTAGACCAAGCAGAAGAAGAAGGAGGAGAAGAAGAAGAGAATAAAACCAAGAAACTGTTGAAGGTGAAGAAGACTAATCAAAAGAGACAGAAAGAACCAAGAGTGGCGTTCATGACGAAAAGCGAGGTCGATCATCTAGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAGGCTGTGAAAAACAGCCCCTTCCCCAGGAGTTACTATCGTTGCACCAGTGCTTCATGTAATGTGAAGAAACGCGTGGAGCGTTCTTTTACTGATCCAAGCACTGTTGTCACTACATATGAAGGCCAACATACACATCCAAGTCCAATTATTCCTCGCTCAGGCCTTACCGGAGCTCCGGTAACACCGGGTGTCTCCGCCACTGATTACTTGACCCAATATCAGCAGCACCACCGTCAACAGCAACTCCTTTTCAATACATTGTCTTCTTTGAGTATCCCTTACAACACTTGTTTTCCTCAAGAGAGACTGGTTTGTAATCCAGGGACAACTGCTGCATTTCTAAGGGACCATGGGCTGCTTCAGGATGTTGTTCCTTCACATATGTTGAAAGAAGAGTAG 918 0.4292 MEKKDMVVNMEGTIGNSSLPGYNPFGNVFDFCEVEKSSLGFMELLGVQDYGNSPQFFDLPQQQSSTMSVPKMVPYETNGKECNSEVLNHQPATPNSSSISSASTSGAVNDEHNKALDQAEEEGGEEEENKTKKLLKVKKTNQKRQKEPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSFTDPSTVVTTYEGQHTHPSPIIPRSGLTGAPVTPGVSATDYLTQYQQHHRQQQLLFNTLSSLSIPYNTCFPQERLVCNPGTTAAFLRDHGLLQDVVPSHMLKEE* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0548 305 Gene3D WRKY domain 136 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan20g0548 305 SUPERFAMILY WRKY DNA-binding domain 153 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan20g0548 305 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 15 297 IPR044810 GO:0003700
Lan20g0548 305 MobiDBLite consensus disorder prediction 85 147 - -
Lan20g0548 305 MobiDBLite consensus disorder prediction 113 135 - -
Lan20g0548 305 ProSiteProfiles WRKY domain profile. 156 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan20g0548 305 Pfam WRKY DNA -binding domain 162 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan20g0548 305 MobiDBLite consensus disorder prediction 85 111 - -
Lan20g0548 305 PANTHER WRKY TRANSCRIPTION FACTOR 15 297 - -
Lan20g0548 305 SMART WRKY_cls 161 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan20g0548 305 Coils Coil 109 129 - -
Lan20g0548 305 PIRSF WRKY_txn_fact_IIc 1 305 IPR017396 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0548 Lan-Chr20 4132272 4134027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0548 27 305 WRKY Transcription Factor Family AT2G47260 47.401 1.34e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lan20g0548 WRKY 1.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0548 - - lang:109353563 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0392 8 6069342 6071124 Lan20g0548 20 4132272 4134027 LSH
Lan20g0548 20 4132272 4134027 Lan4g1359 4 22523194 22525095 LSH
Lan16g0936 16 16416092 16418679 Lan20g0548 20 4132272 4134027 PCT
Lan20g0548 20 4132272 4134027 Lan16g0936 16 16416092 16418679 PCT