Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0538 ATGGAAGAGGTTGTTTTGTTCGTTGATGATTTGCGATTACTTTCTGGGGTTTCTCGTTGTAGAATTTGCCATGAAGAAGAATTTGAGAGCTTAAAAAGCTTAGAAGCTCCTTGTGCTTGTTCTGGAACCGTTAAGTTTGCTCATAGAGATTGCATTCAGAAATGGTGCGATGAGAAAGGAAACACAGTTTGTGAAATATGTCTGCAGAAATATGAACCTGGATATACAGCAGTTCCAAAGAAATCTCAAATTTCTGATGCAGCAATGACAATTAGGGGAAGCTTACAAATTTCAAGGATGGAGCAAGAACCGTTAAATGCAAGAATAGAGGGTATAGTTGAAGGAATAGCAATAGAAGACCATTATTCTGAATGCACTTCTGCTGCAGATAGAAGCGCGTCTTGCTGCAGATCAATGGCTTTAACTTTTACACTAATCTTGCTTGTAAGACATTTATTTGAAGTGCTTTCAAATGGAATGGAAGATTACCCATTTACAATTCTTACTGTTTTTATATTAAGGGCCAGTGGAATTATAGTACCTATGTACATAATTATTAGGACGCTCGGGGGCATTCATAAAAGTATTCAACGTCACTATCTTCAGGATTCTGACGATGACTCATCAATGTTTGATGGAGATGAAGAAAATGAGATATCACATGTTGCAACTTTAAGACATTAA 684 0.3684 MEEVVLFVDDLRLLSGVSRCRICHEEEFESLKSLEAPCACSGTVKFAHRDCIQKWCDEKGNTVCEICLQKYEPGYTAVPKKSQISDAAMTIRGSLQISRMEQEPLNARIEGIVEGIAIEDHYSECTSAADRSASCCRSMALTFTLILLVRHLFEVLSNGMEDYPFTILTVFILRASGIIVPMYIIIRTLGGIHKSIQRHYLQDSDDDSSMFDGDEENEISHVATLRH* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0538 227 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 217 - -
Lan20g0538 227 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Lan20g0538 227 Pfam Protein of unknown function (DUF3675) 73 188 IPR022143 -
Lan20g0538 227 CDD RING_CH-C4HC3_MARCH 20 67 - -
Lan20g0538 227 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Lan20g0538 227 SMART ringv_2 19 68 IPR011016 GO:0008270
Lan20g0538 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 77 IPR013083 -
Lan20g0538 227 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 217 IPR033275 -
Lan20g0538 227 SUPERFAMILY RING/U-box 18 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0538 Lan-Chr20 4043302 4045996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0538 20 67 C3H Transcription Factor Family AT5G05830 38.462 4.72e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0538 - - gmx:100797029 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0404 8 6207036 6209824 Lan20g0538 20 4043302 4045996 LSH
Lan4g0948 4 11886844 11889460 Lan20g0538 20 4043302 4045996 PCT
Lan20g0538 20 4043302 4045996 Lan4g0948 4 11886844 11889460 PCT