Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0534 ATGTTAGAAACGAGTTATCCGTCGCAAGTGTTTCGTGGTGTTCATTTCACACTCTTCGGATTTAATCCCGTTTCGGAGAGCAATATTCGATTCAAGCTTGTAAATGGCGGTGGTGTTGATGCAGGGAAGTACGGTGCAAATTGCTCGCATGTTATTGTTGATAAGATTGCATATGATGATCCAGTGTGTGTTGCTGCGAGAAAAGATGGGAAGACACTCGTCACTGCACTGTGGGTTGATCATAGTGCTGATATTGGAATGCCCGTTGATCCTGCCTCTGTTATGTACAGACCCCTAAAAGATTTAAATGGAATACCTGGTGCACAAAAATTGATTATGTGCTTGACTGGTTATCTGCGTCAGGACCGTGATGACATTATGACAATGGTTGGCCTAATGGGTGCACACTTTTCAAAGCCATTAGTAGCGAACAAGGTTACCCATCTTATATGCTACAAATTTGAAGGGGAGAAGTATGAACTTGCCAAGAAAATGGGCACAATAAAGCTAGTAAATCACCGTTGGTTAGAAGATTGCTTGAGGGATTGGATCCTTCTTCCTGAAGACAAATATAACAAAAGTGGCTATGAATTAGAGGCATTGGAAGCAGAAGCTAAGGATTCTGAGGAAGAAGCTGAAGATTCCAAGTTGGGGCAATCCGGGGGGAGGAATATGAACAGAAGTCCCCTTAGTTCGAAATTTGGTCATGGATTGACAAAATCAGCTGGGGAGCCATCAAATGCCACCTCAGAACATTCTGGTCGACAGGTTTTGCCAAAAGTTAATAATGGTGAAGGCTCTGTAGTTACCCCACAAAATAAGAACATATCTGGTCGGGACTTGAGCTTTCACTATATTGATAACATGAAGATAAGTGCTCAGGCTGCTGATGTTTCTATACATGCTACATCATCTCAGATGCCTGACACATATGTTAAGATCAGTGCATCTAAGAATGCTGAGTTCTCAAATGCAATTTCATCTGGTCTGCCACCTGATCCAAATACCGGAACTTCAGAGTCTAAGAAGTTGGTTTGTGACTTGAGATCCTCGACTGCAAGTGCTGAGAGACTTACACATTCAGATGCTAAGTTTAATTCTATGAGTTATTCTAAAAAGAACCAACGGGGATTTACTCTTCCAAGGAACTTAGACGAATGCTCAGGCAATGCAACTGGCCCAGCTGTGTCACCTTTGGATGATTTCAAATTTGGTAACAACCTTGAAACCTCTTCTACTGAGGTAGAAAATGCAAGTGAGGGAATCAAATATACCTGTATTGAAGGTTCCGGGAAAGGAAATGATTTTATTAAAGGGGATGATTCAATTAATTTATTGCCTCAAAAGAGGATAAAGGAAGCTTCTTCTACTAAATTGAAAACAAGAAAGATGACTACTGATGGAAAATTGTCCAAGGAAAGAACCCCATTATCAAATGGCAAATATCGAGCATTAAAAATGGCATCTCTGGTTAACGAACCACATGTGGCTGATGGGTGTGTTTCTGCTGGCATAGATGGTGTAAGTAACTCAAACATTTGCTCAATTTCTAAATCTGAAGCTTCTAACTCCAAGTCAATGGCATTTGATGAGCCATTTTCAAGAAATGCAAGCTTAGAGTCCGCTCAATGTGATAATGCCTGTCAGTCTTCAGCACAAGCAGCTGTTCAAAGCTTACGCGAGTCTAAAATTATGGGCAAGCCTGATTTCACAGGTTTTGAAATGAGAGAAGTTGATGATGGTCATGAAGCAGAGCAACATAAAATCATGAAAAATCTGGAGTGTTCATCACCTGGTAACAAGAAGTTACCAAACGAGGAACTCATTGGTCTTGTTCATTTGGATTTAAGCAACAAAGAAAGTGGCAAGCTGATTAGAAAATCACCCCGCAAGAAGTCAGTTGCCAAGAAAAGTTCGGGTCGTAGACCTAAAGTAGGTGATTCTGCTAAACAGAAAAGATCAGTTTCCTTGAATGAAACTACTGTGCAAGGTGAAGGTGTAAGCTTTTTTAGTGGAAGTGAAGAGATAGCAACTTGTGATCTGAAGAAGCTTCAGGCGTCCCCTGAAATCCTTAATCTTAATAAAGAAAAGGAGGAAGAGACCATTGGTAAATATGCAGAAGATGCTGGTGGCAGAACAAAAATTTTTGATGATGAAACAGAGGCTCCAGATGACAAATATGAAGATGAGTTGGGAATGTCACTTGATGAAAACAAGTCTGAATTGGTTCATGTTTCTAAAACAGTAAACACAACAAATGTGCAGTCAAAAGCAACTCACAATATGGCAGAATACGAAGAAACAATGCCTCCAAAAAGTAACAAAACTGAAACGAAAAAACAGAAGCCACCTTCACTGGTTGACTCAACCTCAGAGTTAAAAGTAAAGCATAAAGCGACAAAACGTCCTGCAGTTAGAACTAAAAAGACCACAGTTACCAAGGATTTGTTGAAATCTGCTGAGGCTGTATCTGTGGAGAAGAATCATAATGAGAGGAGACATGAGGCAGAGATGGAAATCCCCGGTGAAATGCCCCCCCTGGCTGATATAAGTGATCAGTCAACCTCAAAGTTAGTAGTAAAGCATCAAAGGACAAAACGTCCTGCATGTAGAACCAAAAAGACCACACTTGCCAGGCATTTTTCAAAATCTGAAGAGGCGGCAGCGGTGGAGAAGAATCATAATGAGAGTAAACATGAGGCAGAGATGGAAATCCCTGGAGAAATGCCCAGTGAGCGCTCATCCTCAAAGTTAGAAGTCAAGCATCAATTAAAGAAAAGTCCTGCAGGTAGAACTAAGAAGTGCACGGTTGCCAAGAAGAACTCTGAAGAGGCAGTATCTGTGGACAAGATTCATACTGAAAGGGAAAATGAGGCAGAGATGGAACTACTGGAAGAGATACCCCCTCCTGCCGACTTAAGTGAGAGCTCAACCACACAAAGAAATAAGTCAGATAGCTTTATTGAAGAGAACAAGGAGAATAGACCAATTGATGGAGCAGTAGATGCTGCAAAGTGCAAAAGTATTGGAAGTCGAATTATTAAATCTATTGCAAGGCCAGTAAAGGTTGACTCTAAGAAAATGGGTCCTAATTCAACAATATCAGAAGCTAACACAAAAGCAAAAACTGAAGCCGCATGTTTTTTGGTAAGTGGTCATAGGCTACAAAGAAAGGAGTTTCAACAAGTAATCAAGCGTTTAAAAGGAAGGGTTTGCCGGGATTCTCATCAGTGGTCATATCAGGCAACACATTTCATAGTTCCAGACCCTGTACGCAGGACGGAGAAATTTTTTGCTGCTGCTGCATCAGGAAGGTGGATTCTTAAAACTGATTTCTTAACTGCCAGCACCCAGGCAGGAAAATTGTTGCCAGAGGGGCGTTATGAGTGGCACAAGAGTGGTCTCACTGAGGATGGAGCAATAAATATGGAGGCCCCGAGAAAGTGGCGGCTGTTGAGAGAGAGGACAGGTCATGGCGCTTTCTATGGAATGCGCATTATTGTATATGGTGATTGCATTGCCCCACCTTTGGATACTTTGAAGCGTGTGATCAAATCTGGAGATGGAACAATATTAGCAACTTCTCCTCCTTATACCCGTTTCCTTGACACTGGGGTCGACTATGCCATAGTTAGTCCTGGCATGCCACGTGTTGATGTGTGGGTCCAAGAGTTCTTAAAACATGAGATACCTTGTGTTTTAGCCGACTACTTGGTCGAATATGTCTGCAAACCTGGGTTCTCCCTTGAGAGACATGTACTATATGGCACTCATACTTGGGCAGAGAGGTCATATGATAAACTTCAAAGCAAGGCGGAAGAAATTGTTGAGGAGCTCATTCCTCCCAAGGATTGTGATGAGGATAATAAGGAAGAGGATACAATTTGCCGAGTATGTGGATCCGGGGATAGAGGAGATGTAATGCTGATTTGTGGTGATGAAAAGAGTTCTGTTGGTTGTGGAGTTGGTACTCATATTGATTGCTGTGATCCTCCACTCACAGAAGTTCCCGAGGAAGATTGGTTTTGCCCAAAATGCAATGAAACCTCAAAGTTATCAAATTCTTCTAAGAAAAGGAAAAAGGGTGCCATGTCTTCATCCAAGAGGGAGTGA 4113 0.4172 MLETSYPSQVFRGVHFTLFGFNPVSESNIRFKLVNGGGVDAGKYGANCSHVIVDKIAYDDPVCVAARKDGKTLVTALWVDHSADIGMPVDPASVMYRPLKDLNGIPGAQKLIMCLTGYLRQDRDDIMTMVGLMGAHFSKPLVANKVTHLICYKFEGEKYELAKKMGTIKLVNHRWLEDCLRDWILLPEDKYNKSGYELEALEAEAKDSEEEAEDSKLGQSGGRNMNRSPLSSKFGHGLTKSAGEPSNATSEHSGRQVLPKVNNGEGSVVTPQNKNISGRDLSFHYIDNMKISAQAADVSIHATSSQMPDTYVKISASKNAEFSNAISSGLPPDPNTGTSESKKLVCDLRSSTASAERLTHSDAKFNSMSYSKKNQRGFTLPRNLDECSGNATGPAVSPLDDFKFGNNLETSSTEVENASEGIKYTCIEGSGKGNDFIKGDDSINLLPQKRIKEASSTKLKTRKMTTDGKLSKERTPLSNGKYRALKMASLVNEPHVADGCVSAGIDGVSNSNICSISKSEASNSKSMAFDEPFSRNASLESAQCDNACQSSAQAAVQSLRESKIMGKPDFTGFEMREVDDGHEAEQHKIMKNLECSSPGNKKLPNEELIGLVHLDLSNKESGKLIRKSPRKKSVAKKSSGRRPKVGDSAKQKRSVSLNETTVQGEGVSFFSGSEEIATCDLKKLQASPEILNLNKEKEEETIGKYAEDAGGRTKIFDDETEAPDDKYEDELGMSLDENKSELVHVSKTVNTTNVQSKATHNMAEYEETMPPKSNKTETKKQKPPSLVDSTSELKVKHKATKRPAVRTKKTTVTKDLLKSAEAVSVEKNHNERRHEAEMEIPGEMPPLADISDQSTSKLVVKHQRTKRPACRTKKTTLARHFSKSEEAAAVEKNHNESKHEAEMEIPGEMPSERSSSKLEVKHQLKKSPAGRTKKCTVAKKNSEEAVSVDKIHTERENEAEMELLEEIPPPADLSESSTTQRNKSDSFIEENKENRPIDGAVDAAKCKSIGSRIIKSIARPVKVDSKKMGPNSTISEANTKAKTEAACFLVSGHRLQRKEFQQVIKRLKGRVCRDSHQWSYQATHFIVPDPVRRTEKFFAAAASGRWILKTDFLTASTQAGKLLPEGRYEWHKSGLTEDGAINMEAPRKWRLLRERTGHGAFYGMRIIVYGDCIAPPLDTLKRVIKSGDGTILATSPPYTRFLDTGVDYAIVSPGMPRVDVWVQEFLKHEIPCVLADYLVEYVCKPGFSLERHVLYGTHTWAERSYDKLQSKAEEIVEELIPPKDCDEDNKEEDTICRVCGSGDRGDVMLICGDEKSSVGCGVGTHIDCCDPPLTEVPEEDWFCPKCNETSKLSNSSKKRKKGAMSSSKRE* 1371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0534 1370 Gene3D BRCT domain 1038 1156 IPR036420 -
Lan20g0534 1370 SUPERFAMILY BRCT domain 7 91 IPR036420 -
Lan20g0534 1370 MobiDBLite consensus disorder prediction 202 275 - -
Lan20g0534 1370 SUPERFAMILY BRCT domain 1049 1133 IPR036420 -
Lan20g0534 1370 MobiDBLite consensus disorder prediction 746 950 - -
Lan20g0534 1370 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Lan20g0534 1370 MobiDBLite consensus disorder prediction 625 639 - -
Lan20g0534 1370 ProSiteProfiles BRCT domain profile. 1048 1130 IPR001357 -
Lan20g0534 1370 MobiDBLite consensus disorder prediction 1346 1370 - -
Lan20g0534 1370 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 866 1346 - -
Lan20g0534 1370 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 840 - -
Lan20g0534 1370 MobiDBLite consensus disorder prediction 746 762 - -
Lan20g0534 1370 MobiDBLite consensus disorder prediction 860 877 - -
Lan20g0534 1370 SMART BRCT_7 8 86 IPR001357 -
Lan20g0534 1370 SMART BRCT_7 106 183 IPR001357 -
Lan20g0534 1370 SMART BRCT_7 1039 1120 IPR001357 -
Lan20g0534 1370 SMART BRCT_7 1158 1245 IPR001357 -
Lan20g0534 1370 MobiDBLite consensus disorder prediction 242 257 - -
Lan20g0534 1370 CDD BRCT_TopBP1_rpt7 1047 1120 - -
Lan20g0534 1370 Pfam twin BRCT domain 111 175 IPR001357 -
Lan20g0534 1370 MobiDBLite consensus disorder prediction 878 907 - -
Lan20g0534 1370 Gene3D BRCT domain 1157 1255 IPR036420 -
Lan20g0534 1370 ProSiteProfiles Zinc finger PHD-type profile. 1293 1349 IPR019787 -
Lan20g0534 1370 MobiDBLite consensus disorder prediction 1356 1370 - -
Lan20g0534 1370 MobiDBLite consensus disorder prediction 622 659 - -
Lan20g0534 1370 Gene3D BRCT domain 1 95 IPR036420 -
Lan20g0534 1370 MobiDBLite consensus disorder prediction 808 840 - -
Lan20g0534 1370 MobiDBLite consensus disorder prediction 219 235 - -
Lan20g0534 1370 Gene3D BRCT domain 99 222 IPR036420 -
Lan20g0534 1370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1256 1363 IPR013083 -
Lan20g0534 1370 MobiDBLite consensus disorder prediction 936 950 - -
Lan20g0534 1370 Coils Coil 191 218 - -
Lan20g0534 1370 MobiDBLite consensus disorder prediction 965 989 - -
Lan20g0534 1370 MobiDBLite consensus disorder prediction 704 726 - -
Lan20g0534 1370 SMART PHD_3 1295 1347 IPR001965 -
Lan20g0534 1370 Pfam PHD-finger 1295 1348 IPR019787 -
Lan20g0534 1370 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 840 IPR044254 -
Lan20g0534 1370 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 866 1346 IPR044254 -
Lan20g0534 1370 SUPERFAMILY FYVE/PHD zinc finger 1281 1349 IPR011011 -
Lan20g0534 1370 SUPERFAMILY BRCT domain 110 192 IPR036420 -
Lan20g0534 1370 Pfam BRCA1 C Terminus (BRCT) domain 1051 1116 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0534 Lan-Chr20 3985595 3992424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0534 129 235 Core DNA Replication Machinery Family AT4G02110 65.421 4.45e-37 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan20g0534 BRCT 6.6e-07 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0534 K10728 - gmx:100799144 1540.4