Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0530 ATGGGAAGGGCTCCTTGTTGTGAGAAAGTTGGGTTGAAGAAGGGAAGGTGGACAGAAGAAGAAGATGACATTTTGAGAAAATATATTAAGGAAAATGGTGAAGGTTCATGGAGGTCATTGCCCAAAAATGCAGGATTACTACGGTGTGGGAAGAGTTGTAGGCTAAGATGGATTAACTACCTGAGAGGTAATCTCAAAAGAGGGAACATTTCTGCTGAAGAAGAAGATATCATTGTAAAGTTGCATGCTTCTTTTGGTAACAGATGGTCCTTGATAGCAACTCACTTGTCAGGTAGAACAGACAACGAGATAAAGAACTATTGGAATTCTCACCTTAGTCGCAAAATTTACAGTTTCCGGAGACCAACTATTACGACAGACATGGATCCTACACCGAATGTAGTTATTCCTCCAAGGCGTAGAGGTGGCAGAACTAGCCGTTGGGCCATGAAGAAGAACAAAATCTCTACTCAACAAATACCCAAACACATTGTCCTTCAACAAAATACTAATGAAACTACTCACCCAAAACAGAATAACAATAATAATCATAATAATAATGATGAAGTTGCACTGGAAGTTCTACTACCACCTACCCCATCATTAGAAAGAGAAGGTAATTTCATGGTCTTGGATCCTGACGTAGAAGACACGGTAGAAATAGCTGCAGAAGGTTCAGACAGTAATTGTTCTTCATTATTGAACTATGTTGTTGGAGACATGGATTTGTCTTTTCACGTGGAAGAGGTTAAAACAACACATGATATTTTAGTTGACGGTGAGAAACAACTTAGTGATGACCTGTTAGAAGGGCTACACTATCAACAAGTTGAAGATTGCATTAATGATGTTGGTGGGTCGTTGAGTTATGGTGACAAAGACATCATGGACAATTGTGTTGTGGAAGCGTGTGGAATTTCAAGTGAGGACAATGGTGTAATTAAGGTGACTATGAACGATGGTTATAGTGATGTACAAGATGTGTGTCCTAATAAAATGTCATCAATTGAGGATCAAAATAGGAATGGTGTGAACCTTACTACTACCACCTTAAATGATGAAAATGGTGAGTGGTTATATGATAATTTGGACTGGGAAAACATCATGGCATTTACTAATCATGATGATAAATATAATGAGTCTGATGCAAAGGAATCTAAAGAAGATTTGCTGAATTGGTTGTGGAAAGATGATGAATGGGAAAGTGAATGCAATAATTTGGGTGAGATAGATCTTCAGGAACAAAATGACATGGTTGCTTGGCTTCTCTCTTAA 1275 0.382 MGRAPCCEKVGLKKGRWTEEEDDILRKYIKENGEGSWRSLPKNAGLLRCGKSCRLRWINYLRGNLKRGNISAEEEDIIVKLHASFGNRWSLIATHLSGRTDNEIKNYWNSHLSRKIYSFRRPTITTDMDPTPNVVIPPRRRGGRTSRWAMKKNKISTQQIPKHIVLQQNTNETTHPKQNNNNNHNNNDEVALEVLLPPTPSLEREGNFMVLDPDVEDTVEIAAEGSDSNCSSLLNYVVGDMDLSFHVEEVKTTHDILVDGEKQLSDDLLEGLHYQQVEDCINDVGGSLSYGDKDIMDNCVVEACGISSEDNGVIKVTMNDGYSDVQDVCPNKMSSIEDQNRNGVNLTTTTLNDENGEWLYDNLDWENIMAFTNHDDKYNESDAKESKEDLLNWLWKDDEWESECNNLGEIDLQEQNDMVAWLLS* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0530 424 CDD SANT 16 61 IPR001005 -
Lan20g0530 424 Gene3D - 11 67 - -
Lan20g0530 424 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan20g0530 424 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan20g0530 424 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan20g0530 424 PANTHER MYB TRANSCRIPTION FACTOR 2 376 - -
Lan20g0530 424 SMART sant 13 63 IPR001005 -
Lan20g0530 424 SMART sant 66 114 IPR001005 -
Lan20g0530 424 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lan20g0530 424 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan20g0530 424 Gene3D - 71 116 - -
Lan20g0530 424 CDD SANT 71 112 IPR001005 -
Lan20g0530 424 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 376 - -
Lan20g0530 424 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lan20g0530 424 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0530 Lan-Chr20 3959763 3962811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0530 1 151 MYB Transcription Factor Family AT2G47460 70.440 7.46e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan20g0530 Myb_DNA-binding 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0530 K09422 - gmx:100814275 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0530 20 3959763 3962811 Lan4g1375 4 22808467 22811068 LSH
Lan4g0952 4 12011525 12014938 Lan20g0530 20 3959763 3962811 PCT
Lan20g0530 20 3959763 3962811 Lan4g0952 4 12011525 12014938 PCT