Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0513 ATGCTACCACTTAGTTTCTTTTTCTCCAGTTCTACAATGAAGAACTTCAGAAAAATAGCACCCTTTCTAGCTCTTGTTTTTGTGCTATTCATTTTAGGAACTCACTTCACTAACACCCTTAAAGAACCAAGTCCTACACAAAAACACCACATTCATTTCCATAAACACATTCAAGTAGCTCAATCAACATGCCAAGGAACACTCTACCCAGACCTATGTGTATCAACCCTTGCCACTTTTCCAAACCTTGCTTCCAAATCTGTCCCACAAATTATTTCATCTGTTGTCAACCAAACAGTATATGAAGTCAAATCATCATCCTACAACTGCAGCAGCCTAAGAAAGAAACTAAAAAATTTGAAGCCACTTGAACAAAGAGCCCTTGATGATTGTCTCAAACTGTTTGATGACACCACTGTAGAGCTCAAAACAGCCATTGCTGAACTTTCGAAAACCACAATAGGTTCCAAGCGTTACCATGATTTGCAAACTCTACTAAGTGGAGCAATGACCAACTTGTACACATGCCTCGATGGGTTTGCTTACACCAAAGGAGGAAAGAATAAGGTGAGGGGCAAAATTGAGAAAAGGTTGCTAAAGATATCACACCATGTGAGTAACTCTTTGGCCATGTTGAAGAAAGTGCCCGGAGTGAAGAAAAGTTCCAAGTCTGAAGTCTTCCCTGAATATAGTAAGATGAAAGAAGGGTTCCCTTCTTGGGTGAACTCAAAAGGCCGAAAGCTCCTACAAGCTTCTGTGAGTGAGACTAAGTTTAATTTTGTTGTGGCCAAAGATGGCACTGGCAATTTCACCACTATAGGGGAAGCATTGGCTGCAGCTCCTAATTCCAGCACAACTAGGTTTGTGATACACATAAAGGCAGGGGCATACTTTGAGAATGTAGAAGTGAGCAGGAAGCAGACGAATCTGATGTTTGTGGGAGATGGGATTGGAAAAACAGTAGTGAAGTCCAATAGGAATGTTGTGGATGGCTGGACCACTTTCCAGTCAGCTACTGTTGCTGTTGTGGGACAAGGATTCATAGCTAAAGGTATAACCTTTGAGAACTCAGCTGGGCCAGACAAACACCAAGCAGTGGCACTAAGGAGTGGTGCTGACTTCTCAGTCTTCTACAACTGCAGTTTTATTGGATACCAAGACACTCTCTATGTCCATTCCCTACGCCAATTCTATCGTCAATGTGACATTTATGGCACAGTTGATTTTATATTTGGCAATGCAGCTGTAGTATTCCAAAATTGTAACTTATATGCACGTAAGCCAAATGAAAATCAGAAAAACTTGTTCACTGCACAAGGTAGAGAAGATCCTAACCAAAACACTGGCATATCCATCTTGAATTGCAAGGTTGCTGCTGCTGCAGATTTAATCCCAGTAAAATCATCATTCAAGAACTACCTAGGTCGTCCTTGGAAATTGTATTCAAGGACTGTTTTTCTTAAATCTTACATAGATGACTTGATTGACCCAGCAGGGTGGTTGGAATGGAATGAAACATTTGCATTGGATACATTGTATTATGGAGAGTACATGAATAAGGGTCCAGGTTCAAAGATAAGTGGTAGAGTTGCATGGCCAGGTTATAGAGTAATCAATAACTCCATTGAAGCAAGCCAATTCACTGTGGGGCAGTTTATACAAGGCAATGATTGGTTGAACTCCACTGGTGTTCCATTCTTTGCTAATTTGAATTGA 1716 0.4079 MLPLSFFFSSSTMKNFRKIAPFLALVFVLFILGTHFTNTLKEPSPTQKHHIHFHKHIQVAQSTCQGTLYPDLCVSTLATFPNLASKSVPQIISSVVNQTVYEVKSSSYNCSSLRKKLKNLKPLEQRALDDCLKLFDDTTVELKTAIAELSKTTIGSKRYHDLQTLLSGAMTNLYTCLDGFAYTKGGKNKVRGKIEKRLLKISHHVSNSLAMLKKVPGVKKSSKSEVFPEYSKMKEGFPSWVNSKGRKLLQASVSETKFNFVVAKDGTGNFTTIGEALAAAPNSSTTRFVIHIKAGAYFENVEVSRKQTNLMFVGDGIGKTVVKSNRNVVDGWTTFQSATVAVVGQGFIAKGITFENSAGPDKHQAVALRSGADFSVFYNCSFIGYQDTLYVHSLRQFYRQCDIYGTVDFIFGNAAVVFQNCNLYARKPNENQKNLFTAQGREDPNQNTGISILNCKVAAAADLIPVKSSFKNYLGRPWKLYSRTVFLKSYIDDLIDPAGWLEWNETFALDTLYYGEYMNKGPGSKISGRVAWPGYRVINNSIEASQFTVGQFIQGNDWLNSTGVPFFANLN* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0513 571 Pfam Pectinesterase 260 556 IPR000070 GO:0030599|GO:0042545
Lan20g0513 571 SMART PMEI_2 55 211 IPR006501 GO:0004857
Lan20g0513 571 Gene3D - 253 570 IPR012334 -
Lan20g0513 571 PANTHER PECTINESTERASE 27 570 - -
Lan20g0513 571 PANTHER PECTINESTERASE 27 570 - -
Lan20g0513 571 CDD PMEI-like_3 62 217 - -
Lan20g0513 571 Gene3D Invertase/pectin methylesterase inhibitor family protein 58 217 IPR035513 -
Lan20g0513 571 SUPERFAMILY Pectin lyase-like 256 568 IPR011050 -
Lan20g0513 571 TIGRFAM PME_inhib: pectinesterase inhibitor domain 43 214 IPR006501 GO:0004857
Lan20g0513 571 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Lan20g0513 571 Pfam Plant invertase/pectin methylesterase inhibitor 61 211 IPR006501 GO:0004857
Lan20g0513 571 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 61 215 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0513 Lan-Chr20 3789346 3794149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0513 84 570 Carbohydrate Esterase AT4G02320 56.740 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0513 K01051 - gmx:100802881 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0513 20 3789346 3794149 Lan4g1389 4 22970751 22975825 LSH
Lan4g0988 4 13672729 13674641 Lan20g0513 20 3789346 3794149 PCT
Lan16g0925 16 16234498 16236774 Lan20g0513 20 3789346 3794149 PCT
Lan20g0513 20 3789346 3794149 Lan16g0926 16 16269974 16275744 PCT