Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0494 ATGGTAATTGTACTTTATGTCCTTCTCCACTGTCTTAACTATTTGTTAAACTCTTTAAATGTCTATACTTTTGTAGGCACATTGAGAGTCACCAGTAGCATGACAAGTGGGAGTGATTCTCGAAAAACGTCCAAGGGTCGCCGGTCATCATTACCAGTTGAAGAAGCCGGTGAAGGTAGTGAAGGTCCTTTAAAGAAAGGCCCGTGGACATCAGCAGAGGATGCTATTTTGTCAGAATATGTCAAAAAGCACGGAGAGGGAAACTGGAACGCAGTCCAGAAGAATTCAGGACTTTCCCGTTGTGGGAAAAGCTGCCGTCTACGCTGGGCAAACCATTTGAGACCTGATTTGAGAAAGGGTGCATTTACTCCAGAGGAAGTGGAACGAATCATTGAGCTCCATGCTAGAATGGGAAACAAATGGGCTCGAATGGCTGCTGAGTTGCCAGGACGCACAGACAATGAAATAAAGAACTATTGGAACACAAGAGTTAAGAGAATGGAACGTTCAGGCTTACCAATTTATCCTGCTGACATATGCCAAAGAGTGTTGAACAACAATCAAGAGAGTCTAGATGACGGCACCTTGCCAAATGGATCTGGACAGCATGATGATGTCTCACAGACAGATGATTTTGATATACCAGATCTTCAATTCAAAAATTACAAAATTCCCCCGGCTCTATCTTATGGACCATCAAGTTTTGATATACCTGAAAGCGACATGTTTCGAAAAACTTCAGACTCATCTCATAGTTATAATGCCTTGTCTGCAACACATCCTACAAAGCGCCTTCGGGTGTCAGATGTGTTATACAATAATAGTCTTGATAGTCACATCAGCAGTACTGTCCCATTATTTGATCAGTATGGCAATTACACTTGTGAGAAAATTTCTGATCACCCTAGATTTCCTTCTCCATATGATCTCATTTTTGACGCTGGTCAGTTTCATGGTTTTAACTTTGCTGGCAGCCATGCCGCTTTAAATGGCAATACTTCTTCTTCTGTGCCCATAAATGGGGCCATGAAGTTGGAGCTCCCTTCACTCCAATATTCAGAAAACCAACAAGGTAGCTGGGGCATGCCTGCATCTCCACTTCCTTCACTTGAGTCTATTGATACATTGATTCAATCTCCTCCAACTGATCTTGCTCGGTCAGATCCTGTTTCTCCGCAAAACAGTGGTTTGTTGGAAGCAATAATCTTGGAAGCAAAGAATTTGAATTGGTCAGACAATAATTCATCGAAACAGACACCTGAAAGTCACGTCCTCAATGAAGCAGTCAAGAGTTCAACCTTGAATCCCTGTAGAACAGAATGTGATGAACAAGGGGATCTAAATTCCCTCTTAGGTCAGTCTGCTGCTTCAGTTCTGTCTGACTATACTCATATTAGCTTCTGCTCAGTGGATTGGTCCCAATCAATTGAAACAACTCAAGATCATGATATTCAGCATGAATCAGTCGCACAGTTCCCAGCTTACTGTTCCAGTACGGAAACGTGGAGTAAGATAGACCTTACAGGGCCTGATGCTATATTTGAGTATGATTTGTTTGACAATAGCATTGAATCTAGCATTGATCAATCTGCTCTAAAAGATGCTTTAGATGCCTTTCTAGCTGAAAATTTGTAA 1635 0.4183 MVIVLYVLLHCLNYLLNSLNVYTFVGTLRVTSSMTSGSDSRKTSKGRRSSLPVEEAGEGSEGPLKKGPWTSAEDAILSEYVKKHGEGNWNAVQKNSGLSRCGKSCRLRWANHLRPDLRKGAFTPEEVERIIELHARMGNKWARMAAELPGRTDNEIKNYWNTRVKRMERSGLPIYPADICQRVLNNNQESLDDGTLPNGSGQHDDVSQTDDFDIPDLQFKNYKIPPALSYGPSSFDIPESDMFRKTSDSSHSYNALSATHPTKRLRVSDVLYNNSLDSHISSTVPLFDQYGNYTCEKISDHPRFPSPYDLIFDAGQFHGFNFAGSHAALNGNTSSSVPINGAMKLELPSLQYSENQQGSWGMPASPLPSLESIDTLIQSPPTDLARSDPVSPQNSGLLEAIILEAKNLNWSDNNSSKQTPESHVLNEAVKSSTLNPCRTECDEQGDLNSLLGQSAASVLSDYTHISFCSVDWSQSIETTQDHDIQHESVAQFPAYCSSTETWSKIDLTGPDAIFEYDLFDNSIESSIDQSALKDALDAFLAENL* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0494 544 CDD SANT 68 113 IPR001005 -
Lan20g0494 544 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 168 IPR017930 -
Lan20g0494 544 CDD SANT 121 162 IPR001005 -
Lan20g0494 544 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Lan20g0494 544 ProSiteProfiles Myb-like domain profile. 114 164 IPR001005 -
Lan20g0494 544 MobiDBLite consensus disorder prediction 188 210 - -
Lan20g0494 544 SMART sant 65 115 IPR001005 -
Lan20g0494 544 SMART sant 118 166 IPR001005 -
Lan20g0494 544 MobiDBLite consensus disorder prediction 188 205 - -
Lan20g0494 544 Gene3D - 121 167 - -
Lan20g0494 544 Pfam Myb-like DNA-binding domain 119 162 IPR001005 -
Lan20g0494 544 Pfam Myb-like DNA-binding domain 66 113 IPR001005 -
Lan20g0494 544 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 32 543 - -
Lan20g0494 544 MobiDBLite consensus disorder prediction 32 69 - -
Lan20g0494 544 SUPERFAMILY Homeodomain-like 64 160 IPR009057 -
Lan20g0494 544 Gene3D - 65 118 - -
Lan20g0494 544 ProSiteProfiles Myb-like domain profile. 61 113 IPR001005 -
Lan20g0494 544 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 32 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0494 Lan-Chr20 3646977 3651004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0494 64 544 MYB Transcription Factor Family AT5G06100 37.271 3.89e-82 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan20g0494 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0494 K09422 - gmx:100800658 619.002