Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0492 ATGGGGGAATTTGAATCTGAAGCAGCAGTGTGTGTTCCAAAATGGGGATCCAAACCTTGCATCATGGGAATCGACGAAGCTGGAAGAGGCCCTGTTCTCGGACCAATGGTCTATGGTTGCTTATACTGTGCTCGCTCCTACCAGAAAACCCTCTCCACTTTGAGTTTCGCAGATTCTAAGACACTAAAAGAAGAGAAGAGGGAAGAATTATTTGAAGCTTTGAAGGAAAATGATTCAATTGGATGGGCTGTTGATGTCATTGATCCAAGGGAACTCTCTGCTAAAATGCTCAAGAAGAATAAGATAAACTTGAATGAAATATCACATGACTCTGCCATGGGCCTCATTGATAGAGTACTCAAAATGGGAGTGCTTCTAACTGAGGTTTATGTAGATACAGTTGGAGATGCAGGGAAATATGAAGCTAAGCTGTCTAAGATCTTTCCGTCTATAAAATTTGTGGTTGCAAAGAAGGCTGATAGTCTTTATCCTGTTGTCAGTGGTGCAAGCATAGTTGCAAAGGTCACTAGAGACCGAGCTGTAAGAGAATGGGTGCTTGATGAGACTGCTGAAAACATGCACAGGAACTTTGGTTCTGGATATCCTTCAGATCCCCAAACCAAGTCTTGGTTAAAAGATCACAGCCATTCTATCTTTGGATTTCCAAGTTTGGTCCGATTTAGTTGGGGAACTTGCACCACTTATTTTAGAGATGGCGCGGAAGTGTTATGGGAGTCTGATAAGGATGAAGATGGTGATAGCAATAATCAAAACGGCAAGCGGCAATTGAAATTAAGCAATGTGGGTTTCACAACATCCAAAAGGAGAAGTGATGAAGTGGAATCAAGTGGTAAAGGACGCAGTAGGTTTTTCCAGACTCGGAAACTTGAGCACCTTGCTTATTTCTGA 909 0.4224 MGEFESEAAVCVPKWGSKPCIMGIDEAGRGPVLGPMVYGCLYCARSYQKTLSTLSFADSKTLKEEKREELFEALKENDSIGWAVDVIDPRELSAKMLKKNKINLNEISHDSAMGLIDRVLKMGVLLTEVYVDTVGDAGKYEAKLSKIFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRAVREWVLDETAENMHRNFGSGYPSDPQTKSWLKDHSHSIFGFPSLVRFSWGTCTTYFRDGAEVLWESDKDEDGDSNNQNGKRQLKLSNVGFTTSKRRSDEVESSGKGRSRFFQTRKLEHLAYF* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0492 302 Gene3D - 4 191 IPR036397 GO:0003676
Lan20g0492 302 Pfam Ribonuclease HII 22 232 IPR024567 GO:0004523
Lan20g0492 302 CDD RNase_HII_eukaryota_like 22 241 - -
Lan20g0492 302 PANTHER RIBONUCLEASE H2 SUBUNIT A 8 299 IPR001352 GO:0003723|GO:0004523
Lan20g0492 302 PANTHER RIBONUCLEASE 8 299 - -
Lan20g0492 302 MobiDBLite consensus disorder prediction 247 286 - -
Lan20g0492 302 SUPERFAMILY Ribonuclease H-like 20 236 IPR012337 -
Lan20g0492 302 MobiDBLite consensus disorder prediction 258 273 - -
Lan20g0492 302 TIGRFAM TIGR00729: ribonuclease HII 21 234 IPR004649 GO:0004523|GO:0016070
Lan20g0492 302 Gene3D Ribonuclease hii. Domain 2 192 241 IPR023160 GO:0004523
Lan20g0492 302 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 19 241 IPR024567 GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0492 Lan-Chr20 3638233 3641394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0492 7 302 Core DNA Replication Machinery Family AT2G25100 63.851 1.25e-141 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0492 K10743 - gmx:100779875 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0436 8 6545678 6549479 Lan20g0492 20 3638233 3641394 LSH