Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0487 ATGTTTCAGGATTCCACCACCATGCCAACGCGGTGGCCAACTCAGCCGAGCCGGTGGACTCACCACCAGGACAAGCTATTCGAGCGAGCTTTGTTGTTCGTTCCCGAGGACGCGCCGGACCGGTGGGCGAAGATTGCTGAGCATGTGCCAGGTAAGTCGGTGGCGGAGGTGAAGGAGCACTACGATGATTTGGTGCACGATGTGTTTGAGATTGACTCGGGTCGGGTCTCGGTGCCGGAGTACAATGATGAATTAGCGGCGGTGACTGGTGGAAGTGAAGGGTTGTCGTCGTGGGACTCTTCTAGTCAGATATCGTTTGGGTCAAAAACTAAACATGGTGATAACGAGAGGAAGAAAGGAACGCCATGGACGGAAGAGGAACACAAGCTATTTCTCATTGGGCTAAATAAATTTGGCAAGGGAGATTGGAGAAGCATTTCAAGGAATGCTGTTGTGACAAGAACACCAACTCAAGTTGCTAGTCATGCTCAGAAATACTTCCTTCGCCAAAATTCAGGGAAGAAAGAGAGGAAAAGATCGAGCATCCATGACATAACCACAGTGGACAGCAACTCCGTGCCTGCGCCAATGGATCAGAATTGGGTTCCTCCCCCGAGCCGTCCAATGCAGCAGTTACAGGAAATGCAGTTTAACCCAAGAAACAATTTTCAAAATCAAATGGGTGGGTTTGGGTATTCAAACTATGGGTTTTGA 714 0.4958 MFQDSTTMPTRWPTQPSRWTHHQDKLFERALLFVPEDAPDRWAKIAEHVPGKSVAEVKEHYDDLVHDVFEIDSGRVSVPEYNDELAAVTGGSEGLSSWDSSSQISFGSKTKHGDNERKKGTPWTEEEHKLFLIGLNKFGKGDWRSISRNAVVTRTPTQVASHAQKYFLRQNSGKKERKRSSIHDITTVDSNSVPAPMDQNWVPPPSRPMQQLQEMQFNPRNNFQNQMGGFGYSNYGF* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0487 237 SUPERFAMILY Homeodomain-like 17 73 IPR009057 -
Lan20g0487 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 115 171 IPR017930 -
Lan20g0487 237 Pfam Myb-like DNA-binding domain 122 167 IPR001005 -
Lan20g0487 237 Pfam Myb-like DNA-binding domain 17 62 IPR001005 -
Lan20g0487 237 Gene3D - 121 172 - -
Lan20g0487 237 MobiDBLite consensus disorder prediction 90 122 - -
Lan20g0487 237 ProSiteProfiles SANT domain profile. 118 171 IPR017884 -
Lan20g0487 237 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 14 237 IPR043363 -
Lan20g0487 237 ProSiteProfiles Myb-like domain profile. 115 167 IPR001005 -
Lan20g0487 237 CDD SANT 122 167 IPR001005 -
Lan20g0487 237 Gene3D - 14 78 - -
Lan20g0487 237 ProSiteProfiles Myb-like domain profile. 17 65 IPR001005 -
Lan20g0487 237 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 14 237 - -
Lan20g0487 237 SUPERFAMILY Homeodomain-like 117 171 IPR009057 -
Lan20g0487 237 SMART sant 119 169 IPR001005 -
Lan20g0487 237 SMART sant 15 67 IPR001005 -
Lan20g0487 237 CDD SANT 18 61 IPR001005 -
Lan20g0487 237 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 118 170 IPR006447 GO:0003677
Lan20g0487 237 MobiDBLite consensus disorder prediction 93 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0487 Lan-Chr20 3591988 3594010 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan20g0487 Myb_DNA-binding 2.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0487 - - gmx:547481 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0439 8 6570064 6572356 Lan20g0487 20 3591988 3594010 LSH
Lan20g0487 20 3591988 3594010 Lan4g1409 4 23126450 23129035 LSH