Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0485 ATGCTGCTTCTTCCTATAAGCTGCATGCTTTTAATGTGCCTCCTCCTCAATTCTTCTTTCTCTTTCCAAATCAAAGCTTCTCTCAACCTCTCTTTGCCCCACCAACACCCTCACCCTCAAGCTGTCGTTAATGAACTTCAACGGAAAGTCAATGTATCACTATCCAGAAGAGAACTCCTCTCAAAAGACCAATCATGCCTAACCGGAAACCCAATCGACGACTGCTGGCGGTGCGACCCAAACTGGGCTGCAAACCGCCAGCGTCTCGCCGATTGCGGTATCGGGTTCGGCCGAGACGCATTAGGTGGAAAAGGCGGCCAGATCTACCTAGTAACAGACTCATCAGACTCCAACCCATCAAACCCAATCCCAGGCACACTCCGCCACGCAGTAATCCAAGACGACCCCTTATGGATCATTTTCTCATCCGACATGACAATCAATCTTAAACACGAACTCATTTTCAACAGCTTCAAAACCATAGACGGTCGTGGCACCAACGTGCACGTGACAGGCCACGGTTGCATAACACTCCAATACATCTCCAACGTAATTATCCACAACATCCACGTGCACCATTGCAAACCCTCGGGTAACGCTATCGTACGTTCAAGCCCAACCCATGTTGGGTTCCGTGGCTTATCAGACGGTGACGGAATTTCAATCTTCAGCGCTCATAAAATCTGGATCGACCATTGCTCGTTATCTTATTGTACGGACGGTTTGATCGATGCAATAATGGGGTCCACAGGGATAACAATTTCGAATAACCACTTTGCGCATCACGATGAAGTGATGTTGCTGGGGCATGATGATAGGTATGTGGCTGATAAGGGTATGCAGGTTACAATTGTTTTCAATCATTTCGGAGTGGGTTTGGTGCAGAGAATGCCAAGGTGTAGACATGGATATATACACGTTGCGAATAATGATTTCACACAGTGGGAGATGTATGCTATTGGTGGCAGTGCTTCTCCAACTATTAACAGCCAGGGTAACCGTTACACTGCTCCCTCCGATCCTAATTCAAAAGAGGTGACGAAGCGCGTGGACACAAACGAGAATGAGTGGAGTGATTGGAATTGGAAGACAGAAGGGGACATAATGGTAAATGGAGCATTCTTTGTCCCTTCAGGCGCTGGGGCCAGTGCTCAGTACGCCGAGGCCACCAGTCTACAACCCAAATCCGCCGTGCAAATTGACCAGCTCACCATGTATTCCGGCGTCTTCGGTGATCCCAGGGATAATGGAGATTTATATCCCGGCTTCAACGGAGGTGGGACCGTGACGGAAAGCAGCAAGGGCAACAATGTGGCGGGGTCCGGCAGCGACAGCGGTGACAATGGTAACTTCTTCGGGATGATATTCGGAGGTGGTAGCAGCCAAGCAGCATCACCATCACCTTCCTCATCCATTGTATTTGTTTCAACTTTTTTGTCTTTTTTAATTATTTTCATTTTGGATACTACGACCAACCATGTTATTCTATTATCATTACTATGA 1503 0.4777 MLLLPISCMLLMCLLLNSSFSFQIKASLNLSLPHQHPHPQAVVNELQRKVNVSLSRRELLSKDQSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDALGGKGGQIYLVTDSSDSNPSNPIPGTLRHAVIQDDPLWIIFSSDMTINLKHELIFNSFKTIDGRGTNVHVTGHGCITLQYISNVIIHNIHVHHCKPSGNAIVRSSPTHVGFRGLSDGDGISIFSAHKIWIDHCSLSYCTDGLIDAIMGSTGITISNNHFAHHDEVMLLGHDDRYVADKGMQVTIVFNHFGVGLVQRMPRCRHGYIHVANNDFTQWEMYAIGGSASPTINSQGNRYTAPSDPNSKEVTKRVDTNENEWSDWNWKTEGDIMVNGAFFVPSGAGASAQYAEATSLQPKSAVQIDQLTMYSGVFGDPRDNGDLYPGFNGGGTVTESSKGNNVAGSGSDSGDNGNFFGMIFGGGSSQAASPSPSSSIVFVSTFLSFLIIFILDTTTNHVILLSLL* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0485 500 SUPERFAMILY Pectin lyase-like 65 384 IPR011050 -
Lan20g0485 500 MobiDBLite consensus disorder prediction 426 442 - -
Lan20g0485 500 Pfam Pectate lyase 152 333 IPR002022 -
Lan20g0485 500 PANTHER PECTATE LYASE 18-RELATED 9 431 IPR045032 GO:0030570
Lan20g0485 500 Gene3D - 69 411 IPR012334 -
Lan20g0485 500 PANTHER PECTATE LYASE 9 431 - -
Lan20g0485 500 MobiDBLite consensus disorder prediction 422 442 - -
Lan20g0485 500 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Lan20g0485 500 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Lan20g0485 500 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Lan20g0485 500 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Lan20g0485 500 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Lan20g0485 500 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Lan20g0485 500 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Lan20g0485 500 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Lan20g0485 500 SMART amb_all 144 341 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0485 Lan-Chr20 3547336 3553941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0485 28 416 Polysaccharide Lyase AT3G54920 66.089 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0485 K01728 - gmx:100808438 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0444 8 6646628 6649348 Lan20g0485 20 3547336 3553941 LSH
Lan20g0485 20 3547336 3553941 Lan4g1413 4 23182374 23188119 LSH