Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0478 ATGAAAGAGTGCTTTGTGTTTAGTGAGAAGTCGAAAAATGTCGTTTTTGTTGCTAATAACTTGAAGTATGGAACATTCAACACGAACCTTGGGTCTGCAGAGTTTGCTTCAACAAGGGCAGGGTGCATTGAAATTGGGAAACAACACATGTTCCAGAATATTCAGAATCTGTGTGATTCAAGCATGGCAAATAGAAACCAACAGAGCGATGATGCTTCCACAGATATAGATATGGATGATAAAACCCAATGCAATGGAGTTGGGTATGAGGCACCTGTAGTAGTGGACTCCCAGGATCAAAGTAAGGTTAATGGTGAAGATCAGAAGACTCTTCGAAGATTGGCTCAGAATAGAGAGGCGGCAAGGAAAAGCCGGTTAAGAAAAAAGGCATATGTGCAGCAATTGGAGAACAGTAAGCTTAGGCTTGCACTGTTAGAGCAAGAACTTCAACAAGCACGTCAACAGGGTGTATTTATTGCAACTGGAACAACGGGCAACCATGGTCGTTCAGTTGCTGGAAATGGTGCGTTAGCATTTGACATGGACTATGCCCACTGGGTTGACGAGCATCACCGTCTGATCAACAGCCTAAGATCAGCAGTAAATTCTGAAATGGGTGATAATGAACTGCATTGCCGTGTTGATGCTGTTATGGCACATTATGACGAACTATTTAGGTTAAAGATCATAGGCGCAAAGGCTGATGTATTTCACATGCTTTCTGGAATGTGGAAGACACCTGCCGAAAGATGCTTCATGTGGCTTGGCGGATTCCGTTCATCTGAACTTCTCAAGATAGTCAGAAACCAACTTGAGCCCTTAACCGATCAGCAGTTGATGGGCATTCATTATTTGCAGCTGTGTTCCCAGCAGGCTGAGGATGCTTTATCTGAAGGCATGGAAGCTTTGCAACAATCTCTATTAGATACAGTTTCCTCCACCTCCATGGGGCTCACTGGTTCTGGAAATGTTGCTGAATACATGGGCCAAATGGCAATTGCAATGAGCAAGCTTGCCACAGTAGAGAATTTCCTTCATCAGGCTGACCTCTTGAGGGAACAAACTCTGCAACAGTTGCAAAGAATTTTGACCACACTCCAAGCTGCTCACGCTCTCTTGGCCATAAATGACTACATTTCACGACTACGAACGCTTAGTTCATTATGGTTAGCCTGTCCCAAAGAGTAG 1188 0.4402 MKECFVFSEKSKNVVFVANNLKYGTFNTNLGSAEFASTRAGCIEIGKQHMFQNIQNLCDSSMANRNQQSDDASTDIDMDDKTQCNGVGYEAPVVVDSQDQSKVNGEDQKTLRRLAQNREAARKSRLRKKAYVQQLENSKLRLALLEQELQQARQQGVFIATGTTGNHGRSVAGNGALAFDMDYAHWVDEHHRLINSLRSAVNSEMGDNELHCRVDAVMAHYDELFRLKIIGAKADVFHMLSGMWKTPAERCFMWLGGFRSSELLKIVRNQLEPLTDQQLMGIHYLQLCSQQAEDALSEGMEALQQSLLDTVSSTSMGLTGSGNVAEYMGQMAIAMSKLATVENFLHQADLLREQTLQQLQRILTTLQAAHALLAINDYISRLRTLSSLWLACPKE* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0478 395 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 107 151 IPR004827 GO:0003700|GO:0006355
Lan20g0478 395 SUPERFAMILY Leucine zipper domain 109 151 IPR046347 GO:0003700|GO:0006355
Lan20g0478 395 Pfam Seed dormancy control 194 268 IPR025422 GO:0006351|GO:0043565
Lan20g0478 395 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 6 395 - -
Lan20g0478 395 PANTHER TRANSCRIPTION FACTOR TGA9 6 395 - -
Lan20g0478 395 ProSiteProfiles DOG1 domain profile. 176 392 IPR025422 GO:0006351|GO:0043565
Lan20g0478 395 SMART brlzneu 105 168 IPR004827 GO:0003700|GO:0006355
Lan20g0478 395 Coils Coil 128 155 - -
Lan20g0478 395 Gene3D - 109 156 - -
Lan20g0478 395 Pfam bZIP transcription factor 108 137 IPR004827 GO:0003700|GO:0006355
Lan20g0478 395 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 112 127 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0478 Lan-Chr20 3496798 3500188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0478 11 395 bZIP Transcription Factor Family AT1G68640 60.049 1.16e-145 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lan20g0478 DOG1 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0478 K14431 - tcc:18610523 509.22