Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0473 ATGAAGGTTTTTGTCAAGACTTTGAAAGGCACTCACTTCGAAATTGAAGTCAAGCCCGAAAACACGGTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGGAAAGTTCTTAAGGATGCTACAACCTTGGAGGAAAATAAAGTTGCTGAAAATAGTTTCATTGTAATAATGCTATCGAAGAGTAAGAGTACATCCGGCGAAGGATCTGCTACTTCAACTGCACCTTCAGTGAAGACCCCACAAATAAGTGCAGCTCCTACTTCAACTCCCCCAGTTTCAGTAGCACCACTAGCACCTCAAGCTCCTGCTGGAACTGTACCACCACCTGTACCTGTTACTGCTCCTGCTCCTTCAACTGCTCCTGCTTCTATACCTACGAGCACTGCTGTCAGGGAAGGGTCTGATATCTATGGGCAGGCAGCGTCAAATCTGGTTGCTGGAACCAACTTGGAGGAAATCATTCAGGAAATCCTTGCTATGGGTGGTGGGAGCTGGGATCGCGATACTGTTGTCCGTGCTCTTCGAGCTGCTTATAACAACCCTGAGAGAGCTGTTGAATATCTGTATTCAGGTATTCCTGAACAAGCTGAAGCACCCGTTGTGGCTCAAGTGCCTCCGAGTGCACAACCTGGTAATCCTACAGCTCCTGCTCCACAAGCAGCACAACCATCTCCTGCTACCTTAGGTGGACCGAACGCACTACCTTTAGACCTCTTTCCCCAGGGTCTCCCCAATGTTGGTTCTGGTGCTGCTGGTGCTGGTGCTGGCTCTTTAGACTTTCTACGCAACAGTCAACAATTCCAAGCCTTGCGGGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTACAAGAGCTTGGCAAACAAAATCCCCAACTTATGACATTGATTCGAGATCATCAAGCTGACTTTCTTCGCCTGATAAATGAACCTATGGAAGGTGGCGAAGGGGATTTATTGGGGCAGCTGGCTGGTGGCGTGCCACAAGCAGTAACTGTCACCCCTGAAGAACGTGAGGCAATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCAACTGTGTTGGAGGTTTACTTCGCTTGTAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTTGATGAACAATAG 1203 0.4713 MKVFVKTLKGTHFEIEVKPENTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDATTLEENKVAENSFIVIMLSKSKSTSGEGSATSTAPSVKTPQISAAPTSTPPVSVAPLAPQAPAGTVPPPVPVTAPAPSTAPASIPTSTAVREGSDIYGQAASNLVAGTNLEEIIQEILAMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPVVAQVPPSAQPGNPTAPAPQAAQPSPATLGGPNALPLDLFPQGLPNVGSGAAGAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLMTLIRDHQADFLRLINEPMEGGEGDLLGQLAGGVPQAVTVTPEEREAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDEQ* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0473 400 Gene3D - 159 209 - -
Lan20g0473 400 MobiDBLite consensus disorder prediction 108 134 - -
Lan20g0473 400 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 352 393 IPR015940 -
Lan20g0473 400 TIGRFAM rad23: UV excision repair protein Rad23 1 398 IPR004806 GO:0006289
Lan20g0473 400 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 399 - -
Lan20g0473 400 MobiDBLite consensus disorder prediction 220 251 - -
Lan20g0473 400 Gene3D - 1 80 - -
Lan20g0473 400 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 399 - -
Lan20g0473 400 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Lan20g0473 400 SMART uba_6 166 206 IPR015940 -
Lan20g0473 400 SMART uba_6 355 392 IPR015940 -
Lan20g0473 400 Gene3D - 263 330 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lan20g0473 400 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Lan20g0473 400 PRINTS DNA repair protein Rad23 signature 300 322 IPR004806 GO:0006289
Lan20g0473 400 PRINTS DNA repair protein Rad23 signature 349 365 IPR004806 GO:0006289
Lan20g0473 400 PRINTS DNA repair protein Rad23 signature 366 380 IPR004806 GO:0006289
Lan20g0473 400 PRINTS DNA repair protein Rad23 signature 381 396 IPR004806 GO:0006289
Lan20g0473 400 Pfam XPC-binding domain 274 329 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lan20g0473 400 SUPERFAMILY UBA-like 164 216 IPR009060 GO:0005515
Lan20g0473 400 Gene3D - 347 394 - -
Lan20g0473 400 MobiDBLite consensus disorder prediction 79 142 - -
Lan20g0473 400 SMART CBM 272 315 IPR006636 -
Lan20g0473 400 Pfam UBA/TS-N domain 355 390 IPR015940 -
Lan20g0473 400 Pfam UBA/TS-N domain 166 204 IPR015940 -
Lan20g0473 400 SMART ubq_7 1 75 IPR000626 GO:0005515
Lan20g0473 400 SUPERFAMILY UBA-like 334 398 IPR009060 GO:0005515
Lan20g0473 400 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 164 207 IPR015940 -
Lan20g0473 400 SUPERFAMILY XPC-binding domain 271 336 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lan20g0473 400 CDD Ubl_Rad23 1 74 - -
Lan20g0473 400 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Lan20g0473 400 MobiDBLite consensus disorder prediction 79 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0473 Lan-Chr20 3457500 3461235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0473 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.486 7.08e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0473 K10839 - gmx:100814162 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0452 8 6701425 6705656 Lan20g0473 20 3457500 3461235 LSH