Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0470 ATGCCTGAGCCTAGAAAACAACCAACAAAGAGAAAACAACAAAGGGTCCAACCCTTTCAAGAGCCTAAGATAATGAGAAAACTTCGCATCATTTTCAATGACCCTGATGCTACCGACTCTTCTGATGATGAATCGGAACCAATAAGAGTCAAAAGAAGCATCCGTGAGGTAGCACTTCCCCCTCTTCCTGCCACCAACTCTACTACCACCTTTACTGAAATAACAAGCTCTTGTGATGAAACAAACAAGAGTATTGTTGGTGTTCTAAACAAAACTTGCATCGAAGGTCAACAACCCCAAATCAAGAGAAAGAAAGTTTTTTCACAAAACCCTTCAAGTAAGGTCCTACCTTGTGGCAAGTATAGAGGTGTTAGGCAAAGAAAATGGGGTAAATGGGCTGCTGAAATCCGTGACCCGTTTAGAAGTACCCGTCTCTGGTTAGGTACTTACAACACTGCTGAAGAGGCTTCACAAGCCTATGAGAACAAAAGGCTTGAATTTGAAGCCATGGCAAAGGCTCAATCTTGCAGCAATGGCTCTCATTCTTCTGCTACTTCTGTTGTAGTACCTAAGACTGCTAAGTCTAGTACCAGTTCTGATAAGGGTAACTACACTGCTGTGCAATCTGTATCAGACAAGTCTTCTAGTTCTACTTCAGAAGATTCGGAGAGCATGGTTTCACACACATCACCATCTTCGGTGCTTGAGTTGGATACTTCAGCTTCTAATTTGATAGAGAAAGAAAATGTTGCATGCAATGAAGCTGTTGAGACTTGTGATTTGGTGGCGGAGTTAGCTGATCTGGAGATACCAGATTTAAGCACTTTGAACTTGCCTCCTCCACCATCAAATGCTGCTCTTGCTGCTTCTGTGTCTGAGTTAAATCTTGGCCTTGATTTTGATATGTTGCCATTTGATGACTTTGCAAAGGGCTTTGATGATCTGAGTGGCTTGGATGATATACATATCTTTGGATTTGATGAGAATGATCCAAGTGAACTTCCTGATTTTGATTTTGGTGATTTTGGTTCTGATGATTTCGGTTTTGGTGATTTGGTTGATTTTGGTGCTGATGAGTTTGCTGGGTGGATTGAGGAACCCCTCCATGTACCATGTGCCTAA 1122 0.4198 MPEPRKQPTKRKQQRVQPFQEPKIMRKLRIIFNDPDATDSSDDESEPIRVKRSIREVALPPLPATNSTTTFTEITSSCDETNKSIVGVLNKTCIEGQQPQIKRKKVFSQNPSSKVLPCGKYRGVRQRKWGKWAAEIRDPFRSTRLWLGTYNTAEEASQAYENKRLEFEAMAKAQSCSNGSHSSATSVVVPKTAKSSTSSDKGNYTAVQSVSDKSSSSTSEDSESMVSHTSPSSVLELDTSASNLIEKENVACNEAVETCDLVAELADLEIPDLSTLNLPPPPSNAALAASVSELNLGLDFDMLPFDDFAKGFDDLSGLDDIHIFGFDENDPSELPDFDFGDFGSDDFGFGDLVDFGADEFAGWIEEPLHVPCA* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0470 373 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Lan20g0470 373 PRINTS Ethylene responsive element binding protein signature 143 159 IPR001471 GO:0003700|GO:0006355
Lan20g0470 373 ProSiteProfiles AP2/ERF domain profile. 120 180 IPR001471 GO:0003700|GO:0006355
Lan20g0470 373 MobiDBLite consensus disorder prediction 176 233 - -
Lan20g0470 373 Gene3D AP2/ERF domain 120 174 IPR036955 GO:0003700|GO:0006355
Lan20g0470 373 MobiDBLite consensus disorder prediction 1 22 - -
Lan20g0470 373 CDD AP2 120 160 IPR001471 GO:0003700|GO:0006355
Lan20g0470 373 Pfam AP2 domain 120 169 IPR001471 GO:0003700|GO:0006355
Lan20g0470 373 SUPERFAMILY DNA-binding domain 120 167 IPR016177 GO:0003677
Lan20g0470 373 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 9 372 - -
Lan20g0470 373 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 9 372 - -
Lan20g0470 373 SMART rav1_2 120 174 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0470 Lan-Chr20 3414440 3416960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0470 20 351 AP2-EREBP Transcription Factor Family AT1G68550 33.618 4.86e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan20g0470 AP2 3.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0470 - - lang:109336607 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0455 8 6747992 6750315 Lan20g0470 20 3414440 3416960 LSH
Lan20g0470 20 3414440 3416960 Lan4g1431 4 23359013 23360939 LSH