Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0468 ATGAGTTCTTCAACTACCAAAAATGTGCCCAACCCTGTTTCTGGGAAAACCGCAAGAGCGTGTGATAGCTGCATAACAAAGAGGGCACGTTGGTATTGTGCTGCTGATGATGCTTTTTTGTGTCAAGCTTGTGACTCTTTCGTTCATTATGCTAATCCTTTGGCTCGTAGGCATGAAAGACTCCGTTTGAAAACGGCATCATTCAAGTTCTCAAATGAACTCAATAACTATGCTTCTCCTTCTTGGCACCACAAGAAAGCTCGAACACCAAGACAAGGGAAGCAGAGCTCTAAGCAGTCGAGTGGAAACAATAACAACAACCCTTTTCATCTTGTTCCGGAAGTTGGATTTGATGAAGTGAATTCCCATGATGATAACGAGGAGCAGCTTCTCTATAGGGTTCCTAGATTTGAACCCTTATGCAGCACTCCTTCTTCTGTTACTTCAGGTGAAGTTGCTGAGAAAAGCAAGGTTTCATGGGATTATGATGGTAATAACCATGATGGGGTGGAAAACATGCTCGGTTCTGTTCCATCTGATATTGAACTTGCTGAGTTTGCTGCTGATGTTGAAAGCTTGTTGGGTAAGGGACTTGAAAATGAGTGCATAGGGATGGAAGAATTGGGGTTGGTTGATACAAAACAAGAAGCGTCGTGGGAGTATTCTGTGGGTAGTGGTGGGAAGATGTTGAAGTTTGAAGAGGAAGAGAGAAATGAAGTAGGAGATAAGATGATGATGGAGGAGATAGAAAGAGAAACGTATGAATTGAGCTTTCATTATGATATTTCTAATGAAACAAGTGAGGAGGTGAAAGAAAATGATGACGAAAAGAGGAAGAAGATATTGCTGCAGCTAGATTACGATGCAGTGATTAGTGCCTGGAATAGCCAGAAGTGTCCCTGGACTAATGGTGACAAACCAAATTTGGACTCTGATGAGTGTTGGCCTCACTGCATGGGAAGTTGTGGAAAGGAGCTTCATTATCCTTACGGTGGATTTATGTGTCATTCAGTTGTTGGAGCCGGGGATAGAGAAGCAAGAGTATCAAGATACAGAGAAAAGCGGCGAACAAGGTTGTTCTCGAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGACCCAGAATGAAAGGTAGATTTGTGAAGAGGGCTTCCTTTGAAGCACCAATTTAG 1182 0.4247 MSSSTTKNVPNPVSGKTARACDSCITKRARWYCAADDAFLCQACDSFVHYANPLARRHERLRLKTASFKFSNELNNYASPSWHHKKARTPRQGKQSSKQSSGNNNNNPFHLVPEVGFDEVNSHDDNEEQLLYRVPRFEPLCSTPSSVTSGEVAEKSKVSWDYDGNNHDGVENMLGSVPSDIELAEFAADVESLLGKGLENECIGMEELGLVDTKQEASWEYSVGSGGKMLKFEEEERNEVGDKMMMEEIERETYELSFHYDISNETSEEVKENDDEKRKKILLQLDYDAVISAWNSQKCPWTNGDKPNLDSDECWPHCMGSCGKELHYPYGGFMCHSVVGAGDREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFEAPI* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0468 393 CDD Bbox1_BBX-like 20 63 - -
Lan20g0468 393 Pfam CCT motif 344 386 IPR010402 GO:0005515
Lan20g0468 393 SMART bboxneu5 16 63 IPR000315 GO:0008270
Lan20g0468 393 MobiDBLite consensus disorder prediction 79 113 - -
Lan20g0468 393 ProSiteProfiles CCT domain profile. 344 386 IPR010402 GO:0005515
Lan20g0468 393 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 5 390 - -
Lan20g0468 393 MobiDBLite consensus disorder prediction 93 110 - -
Lan20g0468 393 Pfam B-box zinc finger 18 60 IPR000315 GO:0008270
Lan20g0468 393 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 5 390 - -
Lan20g0468 393 ProSiteProfiles Zinc finger B-box type profile. 16 63 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0468 Lan-Chr20 3378081 3380253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0468 7 386 C2C2-CO-like Transcription Factor Family AT1G25440 45.933 3.02e-100 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lan20g0468 CCT 1.3e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0468 - - cam:101499877 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0457 8 6799647 6801832 Lan20g0468 20 3378081 3380253 LSH