Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0461 ATGAGACCAGAAGGGAACCCATTAGACCTTAACAATTTCCCTGATGAGTACTCTAGAGATGGCAAACAAATCCTCGAAGAAAGCTATTCACCAAGTTGCAGGAAAAAGAAAAACGGCGGGAAGGAAGGAAAAGAAGAGTGTGGGAAGGTGTATGAGTGTAGATTTTGTTCCCTTAAGTTCTGTAAATCTCAGGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAAACAGAGACGCTGAATCATGCTCGTCAACTAGTCTTCCGCACCGATCACACCTTTTCTGCACAAACTGCCCCTCACCTAGGATGCTGTAAACCAATAGGAGCAGCAGGAACAGGAGGAGGTTATCATCCATCAGGCAACATGGGAGACCCAACAGTACCACCACTAAGATTACCAAGATACTTCTCTGCTTCATCATCTTCAACTCACATTCCTCCACCACCACCACCACCTGCACAATATCTCTATGCTTCACCTTCACGCCCACCAGTGTCTTTTCCCTCACACTTTCCCCCTCAGCATGCAGTGAATGATTACTATGTTGGTCATGTTCTTAATCCCATCCACCACAACTACATGAGTGTGGCTGGTTCAGGTGGAGGGGAGTCTGATAGTTACACTTGCATTGGTGCACCGGTGGGACAAGGGTTCAGCGGTGGCGGTGGTGGTAAGGATGGAACACTGCAGAATCAGGAGGAAGGGTTGAATTGGGGAAGGAGCTATTCAGGTGCTGCTGCTGGTTCAGGGATCAATCGGTTTCAAGATGGTTTCTAA 786 0.4847 MRPEGNPLDLNNFPDEYSRDGKQILEESYSPSCRKKKNGGKEGKEECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRTDHTFSAQTAPHLGCCKPIGAAGTGGGYHPSGNMGDPTVPPLRLPRYFSASSSSTHIPPPPPPPAQYLYASPSRPPVSFPSHFPPQHAVNDYYVGHVLNPIHHNYMSVAGSGGGESDSYTCIGAPVGQGFSGGGGGKDGTLQNQEEGLNWGRSYSGAAAGSGINRFQDGF* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0461 261 MobiDBLite consensus disorder prediction 15 44 - -
Lan20g0461 261 MobiDBLite consensus disorder prediction 118 160 - -
Lan20g0461 261 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Lan20g0461 261 Gene3D Classic Zinc Finger 28 103 - -
Lan20g0461 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 78 IPR013087 -
Lan20g0461 261 SUPERFAMILY beta-beta-alpha zinc fingers 49 79 IPR036236 -
Lan20g0461 261 PANTHER ZINC FINGER PROTEIN JAGGED 1 231 IPR031113 GO:0007275
Lan20g0461 261 MobiDBLite consensus disorder prediction 146 160 - -
Lan20g0461 261 MobiDBLite consensus disorder prediction 1 44 - -
Lan20g0461 261 PANTHER ZINC FINGER PROTEIN JAGGED 1 231 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0461 Lan-Chr20 3309957 3312392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0461 4 220 C2H2 Transcription Factor Family AT1G13400 45.701 5.22e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan20g0461 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0461 - - aprc:113871902 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0461 8 6870873 6873643 Lan20g0461 20 3309957 3312392 LSH