Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0453 ATGGAGAACCCATGCCATTCTAAAACCACATTCCCCACTTCCCAAACGCGCCTCAAGCTCTTCGGATTCAACGTCCAAGAAGAAACCCTCGAAGACGAGGTGCTCCATGAAGATGCAACAACTCCAAAAACCACTTCAACTTCAACCTCTCCTCCTTCCTCCTCCTCCAGTGAACGGAAATACGAGTGTCAGTACTGTTGTAGAGAGTTCTCAAATTCACAAGCACTTGGTGGTCACCAAAACGCTCACAAGAAAGAGCGTCAACAACTCAAGCGTGCTCAGTTACAAGCCTCAAGAAACGCCTTCATCCGGAACCCCATCATCTCCGCCTTCGCCCCTCCGCCACACCTCCTCGCTCCGTCGCCAGGATCCGTAATGATCCCGCCGGGTACGCCCTCTTGGGTTTACATGCCGCCACGTGCCGCTCCTCCTCCCTTCCACGTGTCAGTATCACACGGTTGTGTGTTCCCGTCGGCGCACAGCAAAACCATTAGTAGCAGGAGTAACAATAATAGTTACGGTAATTATAGTGGTTGTTGTAATAGTGCAAAATCTGCGGGTATAGGGGTTTTCCCCTATGGTGGCGCTGTAGGTGATTCGTCATCCGCATTGTCAACGATGGGGTCGCAGGTGCAGGCTAGGGCCCACCGTGGTGGAAATGAAGGGTCCTCTTTGAGTAGGTTCTCAAACGGAGATAGTGGGCCCAATTTTGATGATGCATTGGGCTTGGACTTGCACCTTAGCCTTGCCCCTGCTGGGCCTAATGGAATATAA 774 0.5181 MENPCHSKTTFPTSQTRLKLFGFNVQEETLEDEVLHEDATTPKTTSTSTSPPSSSSSERKYECQYCCREFSNSQALGGHQNAHKKERQQLKRAQLQASRNAFIRNPIISAFAPPPHLLAPSPGSVMIPPGTPSWVYMPPRAAPPPFHVSVSHGCVFPSAHSKTISSRSNNNSYGNYSGCCNSAKSAGIGVFPYGGAVGDSSSALSTMGSQVQARAHRGGNEGSSLSRFSNGDSGPNFDDALGLDLHLSLAPAGPNGI* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0453 257 Gene3D Classic Zinc Finger 38 106 - -
Lan20g0453 257 MobiDBLite consensus disorder prediction 208 231 - -
Lan20g0453 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Lan20g0453 257 MobiDBLite consensus disorder prediction 29 58 - -
Lan20g0453 257 PANTHER ZINC FINGER PROTEIN GIS3 9 254 - -
Lan20g0453 257 MobiDBLite consensus disorder prediction 40 58 - -
Lan20g0453 257 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Lan20g0453 257 PANTHER ZINC FINGER PROTEIN 5 9 254 IPR044299 GO:0010090
Lan20g0453 257 SUPERFAMILY beta-beta-alpha zinc fingers 57 88 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0453 Lan-Chr20 3202445 3203416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0453 13 253 C2H2 Transcription Factor Family AT1G68360 44.364 2.86e-53 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0453 - - gmx:100811796 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0453 20 3202445 3203416 Lan4g1445 4 23589643 23590717 LSH