Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0452 ATGGGTTCGAAGATAGAAGGACCATCTACCCCAACAAATCGACGTGATCCTTATGAGGTTTTGTCCGTTACAAGGGACTCTACCGATCAAGAAATCAAAACCGCTTACAGAAAGCTAGCTCTCAAGTATCACCCTGACAAGAATGCTAACAATCCTGAAGCTTCAGAACTATTTAAGGAGGTTGCATACTCTTATACTATCTTGTCTGATCCAGAGAAGAGAAGGCAGTATGACAGTGCAGGATTTGAGGCACTTGATGCTGATAGCATGGACATGGAAATTGACTTATCTAATCTTGGGACTGTCAACACAATGTTTGCAGCTTTATTCAGCAAGCTGGGCGTCCCTATCAAGACTACCATTTCAGCTAATGTACTCGAAGAAGCTCTGAATGGCACTGTTACAGTCAGACCCCTTCCAATTGGAACATCAGTTACTGGAAAGGTAGAGAAGCAGTGTGCTCATTTTTTTGGTGTGACAATAAATGAGCTGCAAGCTGAGTCAGGGATTGTAATAAGAGCTACTTCAACTGCACAAAGCAAATTCAAGTTGCTCTACTTTGAACACGATGCAAATGGTGGCTATGGTTTGGCATTACAGGAAGATAGTGAGAAGACTGGCAAGGTGACATCTGCAGGAATGTATTTCTTACATTTTCAAGTGTACAGAATGGATTCAACCGTGAATGCGTTAGCAATGGCCAAGGATCCTGAAGGGTCTTTCTTTAAAAGGTTGGAAGGTCTTCAACCTTGTGAAGTTGCTGAACTGAAGCCTGGCACTCATATCTTTGCTGTTTATGGGGATAACTTCTTTAAGACTGCTAGCTATACAATTGAGGCAGTATGTGCAAAATCACATGAAGATACCACCAAAAAGCTCATGGACATTGAGGCTCAAATTTTAAGAAAGAGGAATGAGCTACGCCAATTTGAAGCAGAATATAGAAAGGCATTGGCACGCTATCAAGAAGTGACAGACAGATACACAAAAGAAAAACAGTCTGTAGATGAGCTTCTGAAACAAAGGGATGGTATCCATTCTTCCTTCACCATTGTCAAGTCAACCAGTATTAGTGGGAGTGCTAGTAATTTAAGCAATGGAAGTTCTAGCAAAATTTCTGGTGAAGAGAGCCCTGAGGATGGAGGGTCAGATGAAAAGGATAAATCAGGCAAAAAGAAATGGTTTAACCTCAATCTTAAGGGTTCTGATAAGAAGTTGACTTAA 1224 0.4118 MGSKIEGPSTPTNRRDPYEVLSVTRDSTDQEIKTAYRKLALKYHPDKNANNPEASELFKEVAYSYTILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVTGKVEKQCAHFFGVTINELQAESGIVIRATSTAQSKFKLLYFEHDANGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEGSFFKRLEGLQPCEVAELKPGTHIFAVYGDNFFKTASYTIEAVCAKSHEDTTKKLMDIEAQILRKRNELRQFEAEYRKALARYQEVTDRYTKEKQSVDELLKQRDGIHSSFTIVKSTSISGSASNLSNGSSSKISGEESPEDGGSDEKDKSGKKKWFNLNLKGSDKKLT* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0452 407 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 2 405 - -
Lan20g0452 407 SUPERFAMILY Chaperone J-domain 12 86 IPR036869 -
Lan20g0452 407 MobiDBLite consensus disorder prediction 377 407 - -
Lan20g0452 407 PANTHER CHAPERONE PROTEIN DNAJ 15-LIKE 2 405 - -
Lan20g0452 407 ProSiteProfiles dnaJ domain profile. 16 81 IPR001623 -
Lan20g0452 407 SMART dnaj_3 15 73 IPR001623 -
Lan20g0452 407 CDD DnaJ 16 70 IPR001623 -
Lan20g0452 407 Gene3D DnaJ domain 3 98 IPR036869 -
Lan20g0452 407 PRINTS DnaJ domain signature 18 36 IPR001623 -
Lan20g0452 407 PRINTS DnaJ domain signature 36 51 IPR001623 -
Lan20g0452 407 PRINTS DnaJ domain signature 53 73 IPR001623 -
Lan20g0452 407 PRINTS DnaJ domain signature 73 92 IPR001623 -
Lan20g0452 407 Pfam DnaJ domain 16 78 IPR001623 -
Lan20g0452 407 MobiDBLite consensus disorder prediction 358 376 - -
Lan20g0452 407 Coils Coil 286 341 - -
Lan20g0452 407 MobiDBLite consensus disorder prediction 358 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0452 Lan-Chr20 3189872 3195491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0452 9 88 C2H2 Transcription Factor Family AT1G74250 40.000 1.95e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0452 - - lang:109336585 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0469 8 6962379 6968524 Lan20g0452 20 3189872 3195491 LSH
Lan20g0452 20 3189872 3195491 Lan4g1446 4 23603711 23609406 LSH