Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0423 ATGGCAATCCACCATCATCAAATGAATGACCAATTTGAACAACAACAACAACACAATGAAAATGTTTCCTCTGTTCTTGATGCTCTTTACTGTGATGAAGCAAAATGGGAAGATGAAGAAGAAGGAGAGTTATCTTCAGAAGAGAGTAATGTTACAACAACAAACAATAATAATGCTTGTCTTCTTTCCCCTCTGCTCTTGTTAGAGCAAGATTTGTTCTGTGAAGATGAAGAGCTAGACTCTCTCTTCTCCAAAGAAAAGAATGAACAAGAAACCTTTTACTTAAAGAATCACATCACTAGTAATAATATTAATATGGGTTTAGATGACTCTGCTTTCTGTGTGGCGCGTCTTGAAGCAGTTGAATGGATGCTTAAAGTGAATGTTCATTATGGCTTTTCAGTTCTCACTGCAACATTGGCTGTTACTTATTTTGATAGATTCATTTCAACCTTCCATTTTCAAAAGGAGAAGCCTTGGATGATCCAACTTGTAGCTGTTACTTGCATCTCTTTGGCTGCTAAAGTTGAAGAAACTCAAGTCCCTCTTCTTTTAGACCTTCAAGTGCAAGACACTAAATATGTGTTTGAGGCAAAGACCATTCAGAGAATGGAACTGCTTGTGTTATCCACTCTTAAGTGGAAGATGTACCCAGTTACACCACTCTCATTTCTAGATCACATTATAAGGAGGCTGGGATTGAAAACCAATCTTCACTGGGAATTCTTAAGGCGTTGTGAGCATCTTCTTCTATCTGTCCTCTTAGATTCGAGATTTGTTGGTTGCCTTCCTTCTGTTTTGGCCACTGCCACAATGTTGCATGTTATAGATCAGATTGAGCATAAGGATGGTGTAGAATACAAAAATCAGCTTCTCAGTGTTCTCAAAATTAGCAAGGAGAAAGTGGATGAGTGTTACAATGCCATTCTCCATCTTAATCTTAAGGACTCAAATGCCAATAATTATGGTCATAACCCTCTCAAGCGCAAGAATGACCAAATCCCTGGTAGCCCAAGTGGCGTAATTGATGCTGCTTTTAGCTCTGATGGTTCTAACGATTCTTGGGCAGTGGGGTCATCATTATACTCATCACCAAAGACAGAACCTGTGTTGAAGAAGAGCAGAACCCAAAGCCAAGAAAAACAAATGAACTTGTCACCACTTAACAACCGGGTCATTGTCGGAATTGTTGGCACCTCTCCTTAA 1206 0.3922 MAIHHHQMNDQFEQQQQHNENVSSVLDALYCDEAKWEDEEEGELSSEESNVTTTNNNNACLLSPLLLLEQDLFCEDEELDSLFSKEKNEQETFYLKNHITSNNINMGLDDSAFCVARLEAVEWMLKVNVHYGFSVLTATLAVTYFDRFISTFHFQKEKPWMIQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYVFEAKTIQRMELLVLSTLKWKMYPVTPLSFLDHIIRRLGLKTNLHWEFLRRCEHLLLSVLLDSRFVGCLPSVLATATMLHVIDQIEHKDGVEYKNQLLSVLKISKEKVDECYNAILHLNLKDSNANNYGHNPLKRKNDQIPGSPSGVIDAAFSSDGSNDSWAVGSSLYSSPKTEPVLKKSRTQSQEKQMNLSPLNNRVIVGIVGTSP* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0423 401 PANTHER CYCLIN D3.1 PROTEIN 44 374 - -
Lan20g0423 401 Gene3D - 218 309 - -
Lan20g0423 401 Pfam Cyclin, C-terminal domain 219 318 IPR004367 -
Lan20g0423 401 MobiDBLite consensus disorder prediction 357 382 - -
Lan20g0423 401 CDD CYCLIN 117 209 IPR013763 -
Lan20g0423 401 SUPERFAMILY Cyclin-like 108 216 IPR036915 -
Lan20g0423 401 Gene3D - 116 217 - -
Lan20g0423 401 SUPERFAMILY Cyclin-like 220 318 IPR036915 -
Lan20g0423 401 SMART Cyclin_C_2 219 350 IPR004367 -
Lan20g0423 401 SMART cyclin_7 122 210 IPR013763 -
Lan20g0423 401 PANTHER CYCLINS 44 374 IPR039361 -
Lan20g0423 401 Pfam Cyclin, N-terminal domain 115 217 IPR006671 -
Lan20g0423 401 ProSitePatterns Cyclins signature. 117 148 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0423 Lan-Chr20 2949866 2952818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0423 13 312 Core Cell Cycle Gene Families AT4G34160 55.000 2.23e-109 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0423 K14505 - gmx:547740 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0498 8 7235861 7238508 Lan20g0423 20 2949866 2952818 LSH
Lan20g0423 20 2949866 2952818 Lan4g1487 4 23982629 23984641 LSH
Lan17g1288 17 21131841 21134031 Lan20g0423 20 2949866 2952818 PCT
Lan18g0991 18 14982289 14984432 Lan20g0423 20 2949866 2952818 PCT