Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0411 ATGTCAAATCCTACGCCAAATTCTAACCCAAAGAAGAGTAAGGGTCGCCGAAAGGTTGAAATGAAAAAGATGACTAATGGAAGCAACCTTCAAGTAACCTTTTCGAAACGCCGTAGTGGACTTTTCAAAAAAGCTAGCGAACTTTGCACTCTTTGCGGTGCAGAAGTTGCTCTCATTGTTTTTTCCCCAGCCCATAAGGCTTTCTCTTTCGGCCATCCTAGCGTTGGGGCAATCATAGACAAGTATAAGATGAGATGTCCACAATACAATCAAGATATAGGCACCATGCAGTTTATAGAGGCTCATCGTAATTCCAATGTGCGTGAACTAAATGCTTTGCTAACAAACATTAATGCAGATTTGGAGACTGAGAAAAAGTGCAGCGATGAACTGAACCAGCAACGTAAGGTGTTGCAGGAGCAGTGCTGGTGGGCTACACCGATTCAGGAGATGAACAATCCTGAGCAACTTGATCAGCTAAAGTTGGCTCTGAAGAATCTGAAGAAGGACGTTCTTGGCCATGTGGAAAAACAGCTTTCAAATCAAGGTGGTGCTGCTAATAACCCACAATCTCAATTTTTTGCAGGTGGTTCCTCTTCTTCAAACAACAATTTGCAACTATCTCAGTTGTTTCCAGCTCCTCCACCATCTCAGGTATTTCCGGTTCATCAACCTCATCAGATGCTTCATAATCAGCCTATGATGATGCCCAATCATCTTTTTGATGGATCTGGAATGATGCATCACCCTACCTTCAATAACATGGATGGATTTGGACCAGCCAGTAGAATATATTGA 798 0.4261 MSNPTPNSNPKKSKGRRKVEMKKMTNGSNLQVTFSKRRSGLFKKASELCTLCGAEVALIVFSPAHKAFSFGHPSVGAIIDKYKMRCPQYNQDIGTMQFIEAHRNSNVRELNALLTNINADLETEKKCSDELNQQRKVLQEQCWWATPIQEMNNPEQLDQLKLALKNLKKDVLGHVEKQLSNQGGAANNPQSQFFAGGSSSSNNNLQLSQLFPAPPPSQVFPVHQPHQMLHNQPMMMPNHLFDGSGMMHHPTFNNMDGFGPASRIY* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0411 265 ProSiteProfiles MADS-box domain profile. 14 74 IPR002100 GO:0003677|GO:0046983
Lan20g0411 265 SUPERFAMILY SRF-like 15 86 IPR036879 GO:0003677|GO:0046983
Lan20g0411 265 Gene3D - 94 193 - -
Lan20g0411 265 MobiDBLite consensus disorder prediction 1 28 - -
Lan20g0411 265 PANTHER MADS BOX PROTEIN 14 179 - -
Lan20g0411 265 PRINTS MADS domain signature 16 36 IPR002100 GO:0003677|GO:0046983
Lan20g0411 265 PRINTS MADS domain signature 36 51 IPR002100 GO:0003677|GO:0046983
Lan20g0411 265 PRINTS MADS domain signature 51 72 IPR002100 GO:0003677|GO:0046983
Lan20g0411 265 Gene3D - 26 92 IPR036879 GO:0003677|GO:0046983
Lan20g0411 265 SMART madsneu2 14 73 IPR002100 GO:0003677|GO:0046983
Lan20g0411 265 CDD MADS_MEF2_like 15 83 IPR033896 GO:0000977|GO:0045944
Lan20g0411 265 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 70 IPR002100 GO:0003677|GO:0046983
Lan20g0411 265 Coils Coil 157 177 - -
Lan20g0411 265 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 14 179 - -
Lan20g0411 265 Coils Coil 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0411 Lan-Chr20 2856605 2857560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0411 11 203 Type I MADS-box Gene Family AT5G60440 53.093 7.04e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan20g0411 SRF-TF 4.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0411 - - lang:109356189 267.314