Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0407 ATGACTAGTCCAACTGGAAATTTGACAAACCATAACGAGGGTACTGGTGAACAGATGCACAACCTTGATTCTGGAATGGAACAAAGTGGGTTGTCCGAAAAAACACCTCAGATGGGCTCTGAGTGTTCAGGCAGCGAAAAAAAGGTGCTTGGTACCGCATTAAACAATCCTCTCATTGATGAAAAATCAAATCATGTTTCTGACATTTTGGCTGAGAATCCTGTAATTCAACTGCCTGCTCCCCCACAACATGACTTAGAAAAAAGTCGTCAGACGGGTGAAGGTTTGTGCCTTCAACAAAGTACCTCTGAACAAGTCCCTGTTCATTTATCAAATGATAAATCAGAAAACAAATGTCAGCCATTCTCTCAAAATGTTCAACATGAGCTGGTACAAATGAGTGATGCAGTAACCGGCTTTCTTGTTGAGGACCAAGTACAATCTATTTCTGCACAAGTCCCTATTCATTTATCAGATGATAATTCAGAGAACAAAAGTCAGCCATTCTCCCAAGATGTTGATAATGCGTTTGAAGAAATGAACAACACAGCAACGGACTTTCTTGTTGAGGACCAAACACAATCTATTTCTGCACAAGTCCCTGACCATTTATCAGATGATAAATTAAAGAACACAAGTCAGCCACTTCCCCAAAATGTTCAAAATGAGTTTGAAGAAATGAAAATTGCAGTAACTGGCTCTCTTGTTGAGGACCAAACACTATACATTCCTGCACAAGTCCCTATTAATTTATCAAATGATGAATCAGAGAACAAATGTCAGTCATTCTCTCAAAATGAACTTGTAGAAAAAAGTGATGCAGTAACTGCCATTCTTGTTGAAGACCAATCTCAGTGCATTATTGGAGAAGTCCCTGTTCATCTACCAAATGATAAATCAGAGAACAAATCTCAGTTATTATCTCAAGATGTTCAAAATGAACTGGTACAAAAAAGTGATGCAGAGACTGGTGTTATTGTTGACAACCAAACTCAAACACAAGCGAACATGAGTTATGTGGATCCATCTTTTGGAGATTTTGCTAAAAGTACAACTCCTGCGCGGTTGAGGCACAAGGGTAAAGGAAACTCAAAATTATTGAAGAAGAAGTATATGCTGAGGTCAATAGGAAGCAGTGACAGATCTTTGCGGTCAAGGACACAAGAAAAACCTAAAGCACCTGAATCAAGTAGTACTTTGGTTGATGTCAATAATGATGGAGTGAAGAGGAAAAAAAGGAAGAAGAAAAGTAGAAGAGATGAGGGAAAGATTGATGAGTTTTCTAGAATCAAAGCTCACTTGAGATATTTTTTGAACAGAGTAAGCTATGAGCAAAGCTTGATTGATGCTTATTCTGGTGAAGGCTGGAAAGGATACAGTATGGAAAAATTAAAGCCTGAGAAGGAGCTTCAACGAGCAAAGTCTGCAATACTTCGACGTAAATCACAAATTAGGGATCTATTTCAAAATTTGGATTCGTTATGTGCTGAAGGAAGGCTTCCAGAATCTTTGTTTGATTCCGAGGGGGAGATTGACAGTGAGGATATATTCTGTGCAAAATGCCAGTCCAAAGAGTTGAGCATGGATAATGACATAATTCTCTGCGATGGTGCCTGTGACCGTGGATTTCACCAGCTTTGTCTGGATCCTCCATTGTTAACTGAAAACATTCCATCTGGTGACGAGGGTTGGCTATGCCCAGGGTGTAATTGCAAAGATGACTGCCTCGACCTTGTTAACGACTCCTTAGGAACAAGACTTGCTCTTAGTGATACCTGGGAGAGGGTTTTTCCTGAAGCAGCTGCTGGAAATAGTGAGGATCACGACTTCGAACTTCCTTCTGATGATTCTAGTGATGATTATAATCCTGATGTTTCACAAGATGAGGAGGTTGAAGGAGGCGAGTCAAGTTCTGATGAATCTCAGTATGCTTCTGCTTCCGAGAAATTGGAGGATTCACATCATGAGGATCCATACTTGGGCCTTCCTTCTGAAGATTCAGAGGATGATGATTATAATCCTAATGCTCCAGATCGTGACAATAAAGTCACAGAAGAAAGTTCAAGCTCTGATTTCACATCTGACTCTGAGGATCTTGCTGCTATCAGGAAGGATAACAAGTCCCCTGGACAGGGTGAAGATATTACATCTGCATCATTGGATGATTTTGAGAACTCCAAAAATTCTAGCAAGCAAAAGTGTAAAGTTGGTAAGAGGCCGTCTTTAACTGATGAACTGTCATCTTTAAAAGAGTCAGATCCTGGCCAAGAGGGCTGTGCTCATGTTTCTGGAAAACGAAATGTGGAAAGGCTGGACTACAAAAGGCTGTATGATGAGACATACAAAAGTGATACCAGTGATGATGATGAGGATTGGACCGCAACTACTGGTAGAAAAAAGAAAGCTAGTGGCGAACTGACATCAGTATCACCTGATGGAAAAGTCTCAAATAATTCCAGACCTAATCCTAGGAGAAATCTTCATCAGAATAGAGTTGTAAATACAAATAATTCGCCAGCTAAATCACCTGAAGGCTCTGGAAAATCTAGTAAGCCTAGATTTTCAGCATCCAAAAAAAGACTTGGAGAAGCTGTAGTTCAGAGACTTTACAAATCATTTAAAGAAAATCAGTATCCAGACCGAAACACAAAGGAAACCTTGGCGCAAGAACTCGGACTAACTATTCGGCAGGTTGACAAATGGTTTGGCAATAGTCGTTGGAGTTTCCGGCATTCATCAACCAGCGCCGGTGGAAATGCTTCACGGCAGGCCACTGATACCATGGCTGAAAATAAAGGGGCACTTGGTGGTGAGGAGAGGGATGGTGAATTAGTGTCCCAGGAAGGCAATGGAGAAAAATCGAAGACCCCAAGCACTAGAAAAAGGAAGTATATGTCTGAACCCCAGGCATCCGAAATACCTACAGATGTTGAAATTGCAGGAACAGTGACTCCTGCAAATGCTCAAGAAATGCAGAAAGGTCATAAAAAGAAGACAGGGAAAAGATAA 3009 0.4068 MTSPTGNLTNHNEGTGEQMHNLDSGMEQSGLSEKTPQMGSECSGSEKKVLGTALNNPLIDEKSNHVSDILAENPVIQLPAPPQHDLEKSRQTGEGLCLQQSTSEQVPVHLSNDKSENKCQPFSQNVQHELVQMSDAVTGFLVEDQVQSISAQVPIHLSDDNSENKSQPFSQDVDNAFEEMNNTATDFLVEDQTQSISAQVPDHLSDDKLKNTSQPLPQNVQNEFEEMKIAVTGSLVEDQTLYIPAQVPINLSNDESENKCQSFSQNELVEKSDAVTAILVEDQSQCIIGEVPVHLPNDKSENKSQLLSQDVQNELVQKSDAETGVIVDNQTQTQANMSYVDPSFGDFAKSTTPARLRHKGKGNSKLLKKKYMLRSIGSSDRSLRSRTQEKPKAPESSSTLVDVNNDGVKRKKRKKKSRRDEGKIDEFSRIKAHLRYFLNRVSYEQSLIDAYSGEGWKGYSMEKLKPEKELQRAKSAILRRKSQIRDLFQNLDSLCAEGRLPESLFDSEGEIDSEDIFCAKCQSKELSMDNDIILCDGACDRGFHQLCLDPPLLTENIPSGDEGWLCPGCNCKDDCLDLVNDSLGTRLALSDTWERVFPEAAAGNSEDHDFELPSDDSSDDYNPDVSQDEEVEGGESSSDESQYASASEKLEDSHHEDPYLGLPSEDSEDDDYNPNAPDRDNKVTEESSSSDFTSDSEDLAAIRKDNKSPGQGEDITSASLDDFENSKNSSKQKCKVGKRPSLTDELSSLKESDPGQEGCAHVSGKRNVERLDYKRLYDETYKSDTSDDDEDWTATTGRKKKASGELTSVSPDGKVSNNSRPNPRRNLHQNRVVNTNNSPAKSPEGSGKSSKPRFSASKKRLGEAVVQRLYKSFKENQYPDRNTKETLAQELGLTIRQVDKWFGNSRWSFRHSSTSAGGNASRQATDTMAENKGALGGEERDGELVSQEGNGEKSKTPSTRKRKYMSEPQASEIPTDVEIAGTVTPANAQEMQKGHKKKTGKR* 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0407 1002 MobiDBLite consensus disorder prediction 726 746 - -
Lan20g0407 1002 MobiDBLite consensus disorder prediction 612 636 - -
Lan20g0407 1002 MobiDBLite consensus disorder prediction 645 662 - -
Lan20g0407 1002 MobiDBLite consensus disorder prediction 377 422 - -
Lan20g0407 1002 MobiDBLite consensus disorder prediction 906 928 - -
Lan20g0407 1002 PANTHER HOMEOBOX PROTEIN HAT3.1 320 962 - -
Lan20g0407 1002 MobiDBLite consensus disorder prediction 763 798 - -
Lan20g0407 1002 MobiDBLite consensus disorder prediction 1 42 - -
Lan20g0407 1002 SUPERFAMILY FYVE/PHD zinc finger 507 575 IPR011011 -
Lan20g0407 1002 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 500 579 IPR013083 -
Lan20g0407 1002 MobiDBLite consensus disorder prediction 1 48 - -
Lan20g0407 1002 Pfam PHD-finger 517 572 IPR019787 -
Lan20g0407 1002 CDD homeodomain 858 913 IPR001356 GO:0003677
Lan20g0407 1002 ProSiteProfiles Zinc finger PHD-type profile. 515 572 IPR019787 -
Lan20g0407 1002 Gene3D - 855 923 - -
Lan20g0407 1002 Pfam Homeodomain 863 908 IPR001356 GO:0003677
Lan20g0407 1002 MobiDBLite consensus disorder prediction 600 861 - -
Lan20g0407 1002 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 320 962 - -
Lan20g0407 1002 ProSiteProfiles 'Homeobox' domain profile. 852 912 IPR001356 GO:0003677
Lan20g0407 1002 MobiDBLite consensus disorder prediction 809 852 - -
Lan20g0407 1002 MobiDBLite consensus disorder prediction 76 104 - -
Lan20g0407 1002 SUPERFAMILY Homeodomain-like 853 912 IPR009057 -
Lan20g0407 1002 CDD PHD_PRHA_like 517 569 IPR045876 -
Lan20g0407 1002 MobiDBLite consensus disorder prediction 904 1002 - -
Lan20g0407 1002 MobiDBLite consensus disorder prediction 933 967 - -
Lan20g0407 1002 ProSitePatterns Zinc finger PHD-type signature. 518 569 IPR019786 -
Lan20g0407 1002 MobiDBLite consensus disorder prediction 711 725 - -
Lan20g0407 1002 SMART PHD_3 517 570 IPR001965 -
Lan20g0407 1002 SMART HOX_1 849 916 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0407 Lan-Chr20 2827575 2833573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0407 290 963 Homeobox Transcription Factor Family AT3G19510 41.806 1.39e-133 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Lan20g0407 PHD 1.3e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0407 - - lja:Lj5g3v2112070.1 1008.82