Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0399 ATGATGCGTTTGTGCTACAGCCCTCTCGATTGTTGTTTCCGACGCGGCGGCGGTGACGGACTTCTCTGGCACACTGAATTGAAGCCTCATGCCTCCGGCGACTTCTCGATTGCCGTCGCTCAAGCTAATTATAGTCTCGAAGATCAGAGCCAAGTCTTCACGTCCCCCTCCGCCACTTATATCGGTGTCTACGACGGCCACGGAGGACCTGAAGCTTCTAGATTCGTCAACAGGCATCTCTTCTCTTATTTGCACAAATTTGCCACTGAACAAGGGGGATTATCGGTGGATGTGATTAAAAAGGCGTTTAGTGCCACAGAGGATGAGTTCTGTCATTTGGTGAAGCTGTCAATTCAAATCAGTCCCCAAATTGCTTTGGTAGGATCATGTTGTCTTCTTGGTGCAATTTCAAATAATGTGTTGTATGTTGCCAACCTTGGAGACTCTAGAGTTGTTCTTGGCAGGAGGTATACTGAGAGCAAGAGTTCTCCAGTAGTGGCAGAGCGGTTGTCAACTGATCATAATGTAGCTGACGAAGAGGTGAGAAGAGAAGTTGAAGCCCTCCACCCTGATGATTCAAATATTGTAGTTTATACCCGCGGAGTTTGGAGGATTAAGGGTATTATACAGGTATCAAGATCTATTGGCGATGTGTATTTGAAGAGACCCGATTTTTATAGAGACCCAGTTTTTCAGCAATATGGAAATCCTATTCCTTTGAAGCGTCCTGTAATGACAGCTGAACCATCAGTTATTATCAGGAAGCTGGAGCCAGAAGATTTATTTTTGATATTTGCATCTGATGGCCTTTGGGAACAATTAAGTGATGAAGCAGCAGTTAATATTGTTTTCAAATATCCTAGAGCTGGAATTGCCAAGAGACTAGTTAGAACTGCCCTTCAGAAAGCTGCAAAGAAAAGAGAGATGAGATATGATGATATCAAGAAAATTGACAAAGGAATAAGACGACATTTCCACGATGATATCACTGTTATTGTTATCTTTCTTGATCACCAAGGGGGATCCTCTCATGGTAGATTTAAGCAAACTGCTGTTGGCTGCACAACTGCACCTGTTGATATTTTCTCCCTAAATGCGGAAGAAGCAGAAGCAGAGAAGAGTATGCTTAGTTCAGTTGGCTAA 1143 0.4339 MMRLCYSPLDCCFRRGGGDGLLWHTELKPHASGDFSIAVAQANYSLEDQSQVFTSPSATYIGVYDGHGGPEASRFVNRHLFSYLHKFATEQGGLSVDVIKKAFSATEDEFCHLVKLSIQISPQIALVGSCCLLGAISNNVLYVANLGDSRVVLGRRYTESKSSPVVAERLSTDHNVADEEVRREVEALHPDDSNIVVYTRGVWRIKGIIQVSRSIGDVYLKRPDFYRDPVFQQYGNPIPLKRPVMTAEPSVIIRKLEPEDLFLIFASDGLWEQLSDEAAVNIVFKYPRAGIAKRLVRTALQKAAKKREMRYDDIKKIDKGIRRHFHDDITVIVIFLDHQGGSSHGRFKQTAVGCTTAPVDIFSLNAEEAEAEKSMLSSVG* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0399 380 ProSiteProfiles PPM-type phosphatase domain profile. 34 336 IPR001932 -
Lan20g0399 380 Gene3D - 25 343 IPR036457 -
Lan20g0399 380 SUPERFAMILY PP2C-like 43 338 IPR036457 -
Lan20g0399 380 PANTHER ALPHABET, ISOFORM E-RELATED 4 372 - -
Lan20g0399 380 CDD PP2Cc 47 336 IPR001932 -
Lan20g0399 380 PANTHER PROTEIN PHOSPHATASE 2C 63-RELATED 4 372 - -
Lan20g0399 380 SMART PP2C_4 28 334 IPR001932 -
Lan20g0399 380 Pfam Protein phosphatase 2C 55 305 IPR001932 -
Lan20g0399 380 ProSitePatterns PPM-type phosphatase domain signature. 60 68 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0399 Lan-Chr20 2774307 2777060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0399 16 343 PP2C-type Phosphatase Gene Family AT3G51370 56.250 3.49e-138 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0399 - K01102 gmx:100812137 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0522 8 7473338 7475918 Lan20g0399 20 2774307 2777060 LSH
Lan20g0399 20 2774307 2777060 Lan4g1501 4 24153147 24155842 LSH
Lan6g0251 6 1880039 1882276 Lan20g0399 20 2774307 2777060 PCT