Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0398 ATGACGAGCGCTTCCGAGTTATTCAACAGAAGGCATTATCGATTTGGAGTTGGTCGAGATTCTCTTGATCCAACCTTCGATTCTTCTCCCTCTTCAGATCTTCACCTTCGTCTCCACGACGCCGATTCTCTCCGCCGCCACGATCATGTTCGCCGTCTCCGCCGCCGTTCCTCCCACACCGAGGGTGGAGCGGATAGGTTTATTCATCGCCGGAACCGTTGGCCTGTCTTAAATGATAGCGATGATTCTGCAGAAAATGGGAGAGATGTGAGAGTGAGTGCTAGAGACGTGCTACCTGTTGAAGTGCTACTTGCAAGGGAAAGACTCCTTGAGAGGCTGAGAGGGGACCATGTCTCTACCAACAGGCAACATGGTAGAGACTTGATGGTTGGAGATCAAGCTAGCGAAATATCAAATGATGTTCCAACTGTGGGCTATCTAGTTAGTGACTTGACTTCCCAAATGGGACGGTCACAGCTCTTACAAGAGCTAAACCAAAAGCCACCTGGACTCACTCAGGAGGCCATTGACTGTTTGCATCTGGAAGTTTTTATCAGCACGGTGACAGCATTGGAGTCAAAAGTACTGCAGGATTGTAGCATATGCTTAGAATCTTTCACGGATGGTGATAAGCTGATATGTTTGCCATGTGGACATAAATTTCACTCTGCTTGTTTGAATCCTTGGGTTCGCAGTTGTGGAGACTGCCCGTACTGTAGAAGAGGTATAGTTGTAAATAGTCACTTACCAAAAAAGAAGCTGAATAGTTTATACTATATAGGTTAA 786 0.4656 MTSASELFNRRHYRFGVGRDSLDPTFDSSPSSDLHLRLHDADSLRRHDHVRRLRRRSSHTEGGADRFIHRRNRWPVLNDSDDSAENGRDVRVSARDVLPVEVLLARERLLERLRGDHVSTNRQHGRDLMVGDQASEISNDVPTVGYLVSDLTSQMGRSQLLQELNQKPPGLTQEAIDCLHLEVFISTVTALESKVLQDCSICLESFTDGDKLICLPCGHKFHSACLNPWVRSCGDCPYCRRGIVVNSHLPKKKLNSLYYIG* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0398 261 CDD RING-H2_PA-TM-RING 198 240 - -
Lan20g0398 261 SMART ring_2 199 239 IPR001841 -
Lan20g0398 261 Pfam Ring finger domain 198 240 IPR001841 -
Lan20g0398 261 SUPERFAMILY RING/U-box 198 246 - -
Lan20g0398 261 PANTHER SI:CH211-59O9.10 1 245 - -
Lan20g0398 261 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 1 245 - -
Lan20g0398 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 244 IPR013083 -
Lan20g0398 261 ProSiteProfiles Zinc finger RING-type profile. 199 240 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0398 Lan-Chr20 2768614 2771484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0398 66 244 C3H Transcription Factor Family AT1G49850 42.458 1.21e-38 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0398 - - lang:109335003 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0523 8 7481705 7484559 Lan20g0398 20 2768614 2771484 LSH