Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0390 ATGGCTTTAGAGGCTCTTAATTCTCCCACACCGTTCTCTAGTAGCTACAAAGAAGAGGATAAAGAAATTGATGTTCATATGAGTGAAGCGTGGGCTAAGAGGAAACGCTCAAAACGACCTCGTCTTGATTCTCCACCTACAGAAGAAGAGTACCTTGCTCTCTGTCTCATCATGCTAGCACAAAGTGGCAACGACAACAACAAAACCGACTCTCCCGGTAAGGAAAAAACAGAATCAACATCTTCAAAGTCACAGCCACCGCAACAACAAAAGGAAGAACAAGAATCATTACCGGCTATTAAGGTGATGAGTCATCGGTGCTCCGTTTGCAACAAAGCTTTTCCGTCTTATCAAGCACTTGGTGGACACAAAGCCAGTCACCGCAAGTCCTTATCTGAAAACGGCACCGCCGTAACCACCGTCGCTGCCACCAACAACAGCACCTCCACCGCCATAGCCACTAAAAAGCTTCACGAATGTTCCATCTGTCACAAGTCTTTCCCTACGGGTCAGGCTCTCGGTGGCCACAAGCGGTGTCACTATGAAGGTGGCATCAACAACAACAACAGCAACGTCAACACAAATAACAGCAGTGCTGTAACTGCTATTACATCCTCAGAGGGCGGCGGCGCATCCAGCCATCGACACCGTGACTTTGACCTAAACCTGCCCGCGCCGTTGACAGAGTTCTTGGAGCCGGCGAGGTTCCACGGCGAGAAGAAGGTGAAAATATTTGAACAAGAAGTGGAAAGTCCGTTGCCGGTAACCGCCAAGAGACCGCGTTTGTTTTCTGGTGAAGATAATGAATGA 810 0.4864 MALEALNSPTPFSSSYKEEDKEIDVHMSEAWAKRKRSKRPRLDSPPTEEEYLALCLIMLAQSGNDNNKTDSPGKEKTESTSSKSQPPQQQKEEQESLPAIKVMSHRCSVCNKAFPSYQALGGHKASHRKSLSENGTAVTTVAATNNSTSTAIATKKLHECSICHKSFPTGQALGGHKRCHYEGGINNNNSNVNTNNSSAVTAITSSEGGGASSHRHRDFDLNLPAPLTEFLEPARFHGEKKVKIFEQEVESPLPVTAKRPRLFSGEDNE* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0390 269 Gene3D Classic Zinc Finger 102 180 - -
Lan20g0390 269 MobiDBLite consensus disorder prediction 78 95 - -
Lan20g0390 269 SUPERFAMILY beta-beta-alpha zinc fingers 105 180 IPR036236 -
Lan20g0390 269 MobiDBLite consensus disorder prediction 250 269 - -
Lan20g0390 269 ProSitePatterns Zinc finger C2H2 type domain signature. 160 180 IPR013087 -
Lan20g0390 269 Pfam C2H2-type zinc finger 158 181 - -
Lan20g0390 269 Pfam C2H2-type zinc finger 105 129 - -
Lan20g0390 269 PANTHER ZINC FINGER PROTEIN ZAT10 1 264 - -
Lan20g0390 269 SMART c2h2final6 105 127 IPR013087 -
Lan20g0390 269 SMART c2h2final6 158 180 IPR013087 -
Lan20g0390 269 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 127 IPR013087 -
Lan20g0390 269 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 264 IPR044653 GO:0003700
Lan20g0390 269 MobiDBLite consensus disorder prediction 1 22 - -
Lan20g0390 269 MobiDBLite consensus disorder prediction 62 96 - -
Lan20g0390 269 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Lan20g0390 269 ProSiteProfiles Zinc finger C2H2 type domain profile. 158 180 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0390 Lan-Chr20 2713096 2714421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0390 1 262 C2H2 Transcription Factor Family AT1G27730 42.701 1.32e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan20g0390 zf-C2H2_6 2.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0390 - - gmx:100806788 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0390 20 2713096 2714421 Lan4g1509 4 24232713 24256666 LSH