Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0387 ATGGAATCTACTCAACTGATTTCTGAAGAGTGGTGTTCTCTTAGTGGAATAAACACAGCTGAAGAAGCTGACTTCATGACTCAGTTGCTTGGTGGAAATTCCACCCTTTGGCCAGGCCATGAATCCACAAACACCAATAATACCAATTCATTTTTGCCTTCAAATGTTGCAAATACTAACTTATATTTTTCCCATGGGAGCATCTCTAGTGCTGATAGTGGTAATATCTTTTCCACTACAAGCAGTAGAACTTGCTCCATTGAACCAGCAACAAACTTTGACTCCATGCCCATGGATTTTTGCTTAGGAGATTCCAAATTTAGTCCACACATTTTAAAATGGAATGATAACTTAAGCCAACAGATAAATGTACTAAGCAGTGGTGAAGAGCCAGGCCTAGACCAAGGAGGGCAGGTTCTTAATTACTACAATTTGCATGCTGAAGAGTATAAAAACAAAAACCTAGTGAACACAGCAAAAAGATCAAGGAGGTCAATAGATGAGTTATCAGAGAACATGAGGAATACTAAATCAAGGAAGATTCCAAAATCTGCTTCTATGAGTAGCTTCAATGAAGAGGATAAAAGTGTTGGACTCCAAAGACAAGGGTCTAGTAGTTGCATTTCAGAAGGTGACTCTAATCCTTCTCTAGAGCTAAATGGAGAGGTATCTCCAAGTTTGAGCCCAAAAGATCCTACACTTCCCAATTTTAATAGAAAGTCAAGATCTAACACCTCTCCTGCCACTGATCCACAGACCCTTTATGCAAGAAAGAGAAGAGAAAGAATAAATGAAAGGTTGAGAATATTGCAAAGCCTTGTCCCCAATGGAACTAAGGTGGATATCAGCACTATGCTTGAAGAAGCTGTCCAATATGTGAAGTTTTTACAGCACCAGATTAAGCTTCTGAGCTCTGACGAATTGTGGATGTATGCACCCATTGCTTACAATGGAATCAACATTGGACTAGACCTCATTACAAGCAAAGAACAATAG 996 0.3926 MESTQLISEEWCSLSGINTAEEADFMTQLLGGNSTLWPGHESTNTNNTNSFLPSNVANTNLYFSHGSISSADSGNIFSTTSSRTCSIEPATNFDSMPMDFCLGDSKFSPHILKWNDNLSQQINVLSSGEEPGLDQGGQVLNYYNLHAEEYKNKNLVNTAKRSRRSIDELSENMRNTKSRKIPKSASMSSFNEEDKSVGLQRQGSSSCISEGDSNPSLELNGEVSPSLSPKDPTLPNFNRKSRSNTSPATDPQTLYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQHQIKLLSSDELWMYAPIAYNGINIGLDLITSKEQ* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0387 331 CDD bHLH_AtIND_like 248 310 - -
Lan20g0387 331 MobiDBLite consensus disorder prediction 179 252 - -
Lan20g0387 331 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 35 326 - -
Lan20g0387 331 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 35 326 - -
Lan20g0387 331 SMART finulus 253 302 IPR011598 GO:0046983
Lan20g0387 331 Coils Coil 152 179 - -
Lan20g0387 331 MobiDBLite consensus disorder prediction 161 178 - -
Lan20g0387 331 Pfam Helix-loop-helix DNA-binding domain 257 297 IPR011598 GO:0046983
Lan20g0387 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 249 313 IPR036638 GO:0046983
Lan20g0387 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 247 296 IPR011598 GO:0046983
Lan20g0387 331 MobiDBLite consensus disorder prediction 161 256 - -
Lan20g0387 331 Gene3D - 252 305 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0387 Lan-Chr20 2675479 2677238 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0387 153 323 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 51.075 4.87e-48 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan20g0387 HLH 7.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0387 - - gmx:100816788 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0530 8 7540385 7541819 Lan20g0387 20 2675479 2677238 LSH
Lan20g0387 20 2675479 2677238 Lan4g1513 4 24262151 24263680 LSH