Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0386 ATGGAGCATGCTGAGCAAATTTCTGAAGAATGGAGTTCCCTTAGTGGGTTATACACAGCTGATGAAGCTGACTTTATGAGCCAATTACTTGGTAATTACTCAGTCCCAGAGCAACTCTATGGAAATTTCAATTTGGAAATTCCATCTGTATCATGGCATGGCCATGAATCAACAATAGTGAGTGTGACAAGCAATAACTATAGAAGTTCATATTATCCTGAAAATGCTGCTAATACTAATTATTTGCATAGTAGTAACATATTTCCCAGTACAAGTGGTGCCAATTGCTACTTGAATGATTCAATAACCAACAATGGCTATGTGCCTATTGGTTTTTCCTTGGTGGATGCTAAATTCAGCCCTTATGGTTTTCAAGGGAATGAGAACCAATATATAAATGAAAATATTGAAGAGTTAGATGCAGAGGTTGTTGCTGACAAGAATTTGCAGGCTCAAAAGGAATCTGCAGAAGTACTTGTTTCTGAGCCACCAGAAGAGTATATAACTTGTAACCTGGAGAATTCAGGAAAAAGATCTAAGAGATTGGTGGAGGCCAGAAAGAACAAGAGAAATGTTAAACCAAGGAAGAAGCAAAAATCTGCTTCAATAAGCAACACTGAAGAAGATACAGATGCTGGTATTCAGGGGCTGAACATGAGTAATTGCTGCTCAGAAGATGATTCCAATGCTTCTCAAGAGATAAATGGAGAAGGGTCTTCATGCTTGAGCTTGAGCCCAAAAGATATAAAGTCAAATGGTAAATCAAGGTGTAGTAGGGGTTCTGCTACTGATCCACAGAGCATCTATGCAAGAAGAAGAAGAGAAAGGATAAATGAAAGGTTGAAAATCCTACAAACTCTAGTTCCCAATGGAACAAAGGTGGATATCAGCACTATGCTTGAGGAAGCTGTGGAATATGTGAAGTTTTTACAGCTCCAAATTAAGCTTCTTAGCTCTGATGATCATTGGATGTACGCTCCAATTGCTTACAATGGAATGAACATTGGACTAGACCTCAATCTTACCCCGACCAAACAACCATAG 1044 0.387 MEHAEQISEEWSSLSGLYTADEADFMSQLLGNYSVPEQLYGNFNLEIPSVSWHGHESTIVSVTSNNYRSSYYPENAANTNYLHSSNIFPSTSGANCYLNDSITNNGYVPIGFSLVDAKFSPYGFQGNENQYINENIEELDAEVVADKNLQAQKESAEVLVSEPPEEYITCNLENSGKRSKRLVEARKNKRNVKPRKKQKSASISNTEEDTDAGIQGLNMSNCCSEDDSNASQEINGEGSSCLSLSPKDIKSNGKSRCSRGSATDPQSIYARRRRERINERLKILQTLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDHWMYAPIAYNGMNIGLDLNLTPTKQP* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0386 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 261 310 IPR011598 GO:0046983
Lan20g0386 347 MobiDBLite consensus disorder prediction 184 246 - -
Lan20g0386 347 SMART finulus 267 316 IPR011598 GO:0046983
Lan20g0386 347 PANTHER TRANSCRIPTION FACTOR BHLH54 8 343 - -
Lan20g0386 347 Gene3D - 264 326 IPR036638 GO:0046983
Lan20g0386 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 262 327 IPR036638 GO:0046983
Lan20g0386 347 MobiDBLite consensus disorder prediction 205 246 - -
Lan20g0386 347 Pfam Helix-loop-helix DNA-binding domain 271 311 IPR011598 GO:0046983
Lan20g0386 347 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0386 Lan-Chr20 2670610 2672420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0386 10 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 39.459 9.35e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan20g0386 HLH 4.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0386 - - gmx:100817334 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0531 8 7544450 7546476 Lan20g0386 20 2670610 2672420 LSH
Lan20g0386 20 2670610 2672420 Lan4g1514 4 24266869 24268985 LSH