Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0382 ATGGCTAGTTTTGGAGCAACCACACAAAAGTGCATGGCATGTGACAAAACGGTGTACCTCGTTGATAAGTTAACCGCAGATGGTCGTATCTATCATAAGGCTTGCTTCAGATGCCACCATTGCCGGAATACCCTTAAGCTAAGCAACTATTGTTCTTTTGAGGGAGTGCTCTACTGCAGACCTCACTATGATCAATTATACAAGAGAACTGGTAGCCTTGACAAAAGCTTTGAAGGAACACCCAAAATTCTGAAACCAGAAAGGCAGCTCAGTGGTAATGAGAATAATAAAGTAATGGCAAACGTGTTCTTGGGCACCAGAGACAAATGTGCGAGTTGCAAAAAGACTGTCTATCCCACTGAGAGGGTAACAGTTAATGGGACTCCCTATCACAAGGGCTGCTTCAAATGTACCTATGGAGGTTGTACTATAAACTCAGCAAATTTTGTTACACATGAGGGGAAGCTCTACTGCAAACACCATCACATTCAACTTTTCAAAGAGAAAGGGAATTACAGTCAGCTTGAGAATGAACAAGAAAAAAATTCTGTGACTGAGAACATTACTACCACGGGAAATGTTGCTTAA 588 0.4167 MASFGATTQKCMACDKTVYLVDKLTADGRIYHKACFRCHHCRNTLKLSNYCSFEGVLYCRPHYDQLYKRTGSLDKSFEGTPKILKPERQLSGNENNKVMANVFLGTRDKCASCKKTVYPTERVTVNGTPYHKGCFKCTYGGCTINSANFVTHEGKLYCKHHHIQLFKEKGNYSQLENEQEKNSVTENITTTGNVA* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0382 195 Pfam LIM domain 110 165 IPR001781 -
Lan20g0382 195 Pfam LIM domain 11 65 IPR001781 -
Lan20g0382 195 Gene3D Cysteine Rich Protein 5 75 - -
Lan20g0382 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Lan20g0382 195 Gene3D Cysteine Rich Protein 105 194 - -
Lan20g0382 195 SMART lim_4 10 62 IPR001781 -
Lan20g0382 195 SMART lim_4 109 161 IPR001781 -
Lan20g0382 195 CDD LIM1_SF3 7 69 - -
Lan20g0382 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 36 - -
Lan20g0382 195 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1 1 191 - -
Lan20g0382 195 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Lan20g0382 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Lan20g0382 195 PANTHER OS06G0237300 PROTEIN 1 191 IPR045268 GO:0051015
Lan20g0382 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Lan20g0382 195 MobiDBLite consensus disorder prediction 174 195 - -
Lan20g0382 195 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Lan20g0382 195 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0382 Lan-Chr20 2650968 2652873 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lan20g0382 LIM 3e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0382 K09377 - gmx:100306027 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0382 20 2650968 2652873 Lan4g1520 4 24345060 24347054 LSH