Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0357 ATGCAATTCTCGAAGTTGGATGATTCTCCTATGTTCCGCAAGCAGATACTATGTCAGGAGGAAAGTGCTGAATCTTTGAGAGAGAGAAGTTTAAAGTTCTACAAGGGTTGTAGAAAATACACTGAAGGACTTGGGGAGGCGTATGATGGAGATATTGCATTTGCAAGTTCCCTGGAAACATTTGGTGGAGGGCATAATGACCCTCTCAGTGTGGCTTTTGGAGGTCCTGTTATGACCAAATTCACTATAGCCTTAAGAGAAATTGGGACATACAAGGAAGTCCTTCGTTCCAAGGTTGAGCATATGTTAAATGACAGGTTGTTTCAGTTTGTCAATATCGATTTGCAAGAGGTTAAGGAAGCACGGAAAATCTTTGACAAGGCTAGCATTATTTATGACCAGGCACGTGAAAAATTTTTGTCATTGAGAAAAGGCACAAAAAGTGATATTGTCACTGCTGTAGAAGAGGAGCTTCATAACGCAAGATATGCATTTGACCAAGCTCGATTTAATCTGGTTACTGCCTTGTCAAATGTTGAAGCAAAGAAGAGATTTGAATTTTTAGAAGCAGTAAGCGGGACCATGGATGCTCATCTTCGCTACTTCAAACAGGGGTATGAATTGTTGCACCAAATGGAGCCGTATATTAACCAGGTCTTGACTTATGCTCAGCAATCAAGAGAAAGGTCCAACTATGAGCATGCAGCTCTCAATGAAAAAATGCAGGAGTACAAACGGAAGATTGACCGAGAGAGGTGGTTTTCAAATGGTTCTACGGGGCCTCCAAATGGTGATGGTATACAAGCCATTAGTAGAAGTTCACATAAGATGATAGAGGCAGTTATGCAATCTGCTGCAAAGGGAAAGGTTCAAACTATTCGACAAGGGTATCTCTCAAAGCGTTCCTCAAACCTAAGGGGGGACTGGAAAAGGAGGTTCTTTGTTCTTGATAGCCGGGGAATGCTGTATTACTATCGTAAACAGCACAACAAATCTTCTGGGCCTAGCAGTCAACATTCTGGTCAGAGGAATAGTTCTGAGCTCAGTTCTGGACTTCTAAGCCGATGGCTCTCTTCTCATTATCATGGCGGGGTACATGATGAGAAATCTGTTGCTCATCACACTGTGAACCTGCTCACATCAACAATCAAAGTTGATGCTGACCAATCAGATTTGAGGTTTTGCTTCAGAATCATTTCACCTACAAAGAACTACACTTTGCAGGCAGAGAGTGGTCTGGACCAAATGGATTGGATTGAGAAGATAACAGGTGTTATTGCCTCATTGCTGAGTTCTCAGATTCCAGAAAGGCAGTATTTGCCGTCAAGTCCGATGGGAAGTGGTTATCATAGGTGTGCCAGTGAGAGTAGTTCTCTTGGAAGTTCAGATTTTGATCACTCTGCTGCTGAAGAATATGCAGCAGATAGAAGACTTGCTACTGCACATATGGAGCGCCCTTCAAGAAGTTTGCCGCAGCAAAGATCCTGTACAAAAAGTGAGAAGACTATTGATATGCTGCGAAGAGTTTCCGGGAATGATAAATGTGCTGATTGTGGTGCCCCAGAACCTGATTGGGCATCATTAAATCTCGGCGTCCTTGTTTGCATTGAGTGTTCTGGTGTTCACCGAAACCTTGGTGTACACATATCAAAGGTCAGGTCTCTTACATTAGATGTTAAAGTTTGGGAGCCTTCTGTGATAAGCTTGTTTCAGTCTCTTGGGAATACTTTTACCAATTCAATCTGGGAGGAACTACTGCAATCGAGAAGTGCCTTTCAGATTGGTCTTGTCTCCACAGGAAAACCATGTCAATCCGATTCTCCATCCGTGAAGGAAAAATTCATCCATGCAAAGTATGCAGAGAAGATTTTTGTTCGCAAGCCGAAGGACAATCAATGTCATCTCCCGGTGTCACAACAGATCTGGGAGGCTGTTCATAGTAATGACATAAAAGCTGTATACCGCTACATTGTTAATTCTGATGTTGACATCAATGCCTCTTATGAGCAAACTTGCAGCAATTCTTTAACCCTTGCCAATGATATTTTACTACAAGAGCAGGGGGATCACAGTTCTACATTAGCTGGCAGCTCGTCCGACTTGTCCTCTACTAGCTCTTTGAACTCAGTGAGCATTAAAGAAGGCCGGACAATGGACAATCTAATTGGGCGCAGGCTGCTTCACCTTGCTTGTGAAAGTGCTGATATTGGCATGCTGGAGCTCCTCCTACAGTATGGTGCAAATATTAATGCAACTGATTTGAAAGGTCAAACACCACTACATCGCTGTATTCTCAAAGGCAAAACTGCATTTGCAAGATTACTTCTTTCAAGGGGGGCTGATCCTCGAGCGGTAGATGAGGAGGAAAGAACCCCCATTGAGCTTGCGGCACAGTCATCATTTGATGACAATGAGGTCCATGCACTGTTGTCTGATTCGAGCGGAAAACATTGGTAG 2457 0.4314 MQFSKLDDSPMFRKQILCQEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASSLETFGGGHNDPLSVAFGGPVMTKFTIALREIGTYKEVLRSKVEHMLNDRLFQFVNIDLQEVKEARKIFDKASIIYDQAREKFLSLRKGTKSDIVTAVEEELHNARYAFDQARFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEHAALNEKMQEYKRKIDRERWFSNGSTGPPNGDGIQAISRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQHNKSSGPSSQHSGQRNSSELSSGLLSRWLSSHYHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESGLDQMDWIEKITGVIASLLSSQIPERQYLPSSPMGSGYHRCASESSSLGSSDFDHSAAEEYAADRRLATAHMERPSRSLPQQRSCTKSEKTIDMLRRVSGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFTNSIWEELLQSRSAFQIGLVSTGKPCQSDSPSVKEKFIHAKYAEKIFVRKPKDNQCHLPVSQQIWEAVHSNDIKAVYRYIVNSDVDINASYEQTCSNSLTLANDILLQEQGDHSSTLAGSSSDLSSTSSLNSVSIKEGRTMDNLIGRRLLHLACESADIGMLELLLQYGANINATDLKGQTPLHRCILKGKTAFARLLLSRGADPRAVDEEERTPIELAAQSSFDDNEVHALLSDSSGKHW* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0357 818 Pfam PH domain 293 426 IPR001849 -
Lan20g0357 818 Pfam Ankyrin repeats (many copies) 724 776 IPR002110 GO:0005515
Lan20g0357 818 Gene3D - 631 815 IPR036770 -
Lan20g0357 818 ProSiteProfiles Ankyrin repeat region circular profile. 755 787 - -
Lan20g0357 818 PRINTS HIV Rev interacting protein signature 512 531 IPR001164 GO:0005096
Lan20g0357 818 PRINTS HIV Rev interacting protein signature 531 548 IPR001164 GO:0005096
Lan20g0357 818 PRINTS HIV Rev interacting protein signature 554 575 IPR001164 GO:0005096
Lan20g0357 818 SUPERFAMILY Ankyrin repeat 641 801 IPR036770 -
Lan20g0357 818 ProSiteProfiles Ankyrin repeat region circular profile. 722 753 - -
Lan20g0357 818 SMART PH_update 292 429 IPR001849 -
Lan20g0357 818 Pfam Putative GTPase activating protein for Arf 501 627 IPR001164 GO:0005096
Lan20g0357 818 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Lan20g0357 818 SUPERFAMILY PH domain-like 292 445 - -
Lan20g0357 818 Gene3D Arf GTPase activating protein 481 630 IPR038508 -
Lan20g0357 818 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 813 - -
Lan20g0357 818 ProSiteProfiles Ankyrin repeat profile. 722 754 IPR002110 GO:0005515
Lan20g0357 818 CDD PH_ACAP 294 431 - -
Lan20g0357 818 ProSiteProfiles ARF GTPase-activating proteins domain profile. 500 632 IPR001164 GO:0005096
Lan20g0357 818 SUPERFAMILY BAR/IMD domain-like 6 314 IPR027267 -
Lan20g0357 818 Coils Coil 227 247 - -
Lan20g0357 818 SUPERFAMILY ArfGap/RecO-like zinc finger 500 627 IPR037278 -
Lan20g0357 818 CDD ArfGap 503 619 - -
Lan20g0357 818 SMART arf_gap_3 500 632 IPR001164 GO:0005096
Lan20g0357 818 PANTHER CENTAURIN/ARF 1 813 IPR045258 GO:0005096
Lan20g0357 818 SMART ANK_2a 788 818 IPR002110 GO:0005515
Lan20g0357 818 SMART ANK_2a 722 751 IPR002110 GO:0005515
Lan20g0357 818 SMART ANK_2a 755 784 IPR002110 GO:0005515
Lan20g0357 818 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Lan20g0357 818 ProSiteProfiles Ankyrin repeat profile. 755 787 IPR002110 GO:0005515
Lan20g0357 818 Pfam BAR domain of APPL family 6 233 - -
Lan20g0357 818 CDD BAR_SFC_plant 14 215 IPR035670 -
Lan20g0357 818 ProSiteProfiles PH domain profile. 291 427 IPR001849 -
Lan20g0357 818 Gene3D - 284 438 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0357 Lan-Chr20 2480559 2488733 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0357 504 626 C2H2 Transcription Factor Family AT4G21160 42.742 2.17e-21 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0357 K12489 - gmx:100798227 1335.47